Variant report

Variant	rs4775944
Chromosome Location	chr15:51775610-51775611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:51775360-51775692	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51773834..51778249-chr15:51779820..51782019,4	K562	blood:

Variant related genes	Relation type
DMXL2	TF binding region

Extended variants
information (count: 226 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs10220909	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1031664	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10438320	0.90[EUR][1000 genomes]
rs10467923	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10467924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10519312	0.92[EUR][1000 genomes]
rs10519313	0.96[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs1077361	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10775144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1080394	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10851500	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10851502	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes]
rs11070851	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11070852	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11070853	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11070854	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11070855	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070856	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070857	0.96[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs11070859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070860	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070863	0.89[EUR][1000 genomes]
rs11630336	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11630743	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11630842	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11631408	0.91[CEU][hapmap];0.80[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11632853	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11633395	0.92[EUR][1000 genomes]
rs11633713	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11634039	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11634110	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11634180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11634999	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11635216	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11635592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11636170	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11636428	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11638240	0.91[EUR][1000 genomes]
rs12050598	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12050600	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12101730	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12101920	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12102203	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12372948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12438892	0.96[CEU][hapmap];0.83[CHB][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12440990	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs12441167	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12441759	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12442725	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12442803	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12442947	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12443007	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12443362	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12592179	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12592653	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592889	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12593979	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12913493	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17524813	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17603116	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17609666	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17609693	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17609791	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17609812	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17609917	0.92[EUR][1000 genomes]
rs17609924	0.92[EUR][1000 genomes]
rs1902592	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1902593	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1902594	0.93[EUR][1000 genomes]
rs2124592	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2124875	0.96[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2124876	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2124877	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2124878	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2124879	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2278988	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2278989	0.96[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs2278990	0.96[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes]
rs2305708	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes]
rs2414105	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414107	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2414109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2414111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2414113	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2414114	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28376817	0.93[EUR][1000 genomes]
rs28393906	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28410165	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28415556	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28428679	0.92[EUR][1000 genomes]
rs28431083	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28648597	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28680710	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28695624	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28795073	0.88[EUR][1000 genomes]
rs28854610	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28866855	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28878886	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2899475	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2899476	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2899477	0.86[EUR][1000 genomes]
rs3736485	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4143721	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4143722	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4143723	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4143724	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4144941	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4359386	0.90[ASN][1000 genomes]
rs4438255	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4462536	0.90[ASN][1000 genomes]
rs4462537	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4545756	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4774589	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4774590	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4774591	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4774592	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774593	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4774595	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4774596	0.92[EUR][1000 genomes]
rs4774597	0.88[EUR][1000 genomes]
rs4774598	0.92[EUR][1000 genomes]
rs4775943	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4775946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775951	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4775952	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4775953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4775955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4775956	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775958	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4775959	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4775960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4775961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775963	0.93[EUR][1000 genomes]
rs4775965	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4775966	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55981933	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56189052	0.93[EUR][1000 genomes]
rs60060794	0.82[EUR][1000 genomes]
rs62014659	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62016017	0.93[EUR][1000 genomes]
rs6493498	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6493499	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6493500	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6493501	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493503	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493510	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493513	0.91[EUR][1000 genomes]
rs67524810	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7161973	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162361	0.96[EUR][1000 genomes]
rs7162412	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7162563	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7165887	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7167760	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7168546	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7168749	0.84[EUR][1000 genomes]
rs7169753	0.85[EUR][1000 genomes]
rs7169786	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7170217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7170330	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7170444	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7171439	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7171884	0.82[CEU][hapmap]
rs7173880	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7174435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7174495	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs7174655	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7176044	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7177471	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7177720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7181470	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7182977	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7183435	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7183479	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7495962	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs750162	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs750163	0.92[EUR][1000 genomes]
rs8023455	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs8024506	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8028017	0.92[EUR][1000 genomes]
rs8030121	0.86[EUR][1000 genomes]
rs8030534	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8031875	0.88[EUR][1000 genomes]
rs8031903	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034197	0.84[EUR][1000 genomes]
rs8035135	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8036609	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8036821	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8036904	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8037167	0.96[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes]
rs8037340	0.89[EUR][1000 genomes]
rs8037840	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8038101	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8038203	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8038341	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8039073	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8039835	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8040080	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8040538	0.93[EUR][1000 genomes]
rs8040648	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041197	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8041514	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8042221	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8042840	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs882385	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs882386	0.89[EUR][1000 genomes]
rs930920	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs9708186	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9744054	0.86[EUR][1000 genomes]
rs9806598	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9920124	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920145	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9944241	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9944259	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9944263	0.87[EUR][1000 genomes]
rs9944264	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv904218	chr15:51743186-51873407	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4775944	DMXL2	Cis_1M	lymphoblastoid	RTeQTL
rs4775944	DMXL2	cis	multi-tissue	Pritchard

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51737000-51776400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:51738200-51784600	Weak transcription	Stomach Mucosa	stomach
3	chr15:51738400-51777400	Weak transcription	Small Intestine	intestine
4	chr15:51739000-51776000	Weak transcription	Gastric	stomach
5	chr15:51742400-51775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:51742600-51776000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:51742600-51776600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:51742600-51776800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:51743000-51780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:51748000-51776400	Weak transcription	Right Ventricle	heart
11	chr15:51749000-51776600	Weak transcription	Fetal Kidney	kidney
12	chr15:51749200-51777400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:51750800-51776200	Weak transcription	NHDF-Ad	bronchial
14	chr15:51750800-51776600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:51750800-51777400	Weak transcription	Osteobl	bone
16	chr15:51751000-51776200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:51751000-51777400	Weak transcription	NHLF	lung
18	chr15:51751200-51777200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:51751800-51776400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:51751800-51777400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:51754400-51777400	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:51763000-51776600	Weak transcription	Primary T cells from cord blood	blood
23	chr15:51763200-51776400	Weak transcription	Brain Anterior Caudate	brain
24	chr15:51763200-51777400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:51763600-51776000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:51763600-51776200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:51763600-51776400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:51763600-51826800	Weak transcription	Colonic Mucosa	Colon
29	chr15:51763800-51776000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:51763800-51776600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:51763800-51782000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:51763800-51784000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:51765800-51775800	Weak transcription	Placenta	Placenta
34	chr15:51768800-51776000	Weak transcription	A549	lung
35	chr15:51769000-51776000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:51769000-51777200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:51773000-51776000	Weak transcription	Brain Angular Gyrus	brain
38	chr15:51773000-51782000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:51773400-51776400	Weak transcription	K562	blood
40	chr15:51773600-51776000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr15:51773800-51776200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:51773800-51776400	Weak transcription	Liver	Liver
43	chr15:51774000-51776600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:51774600-51779800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr15:51775000-51775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:51775000-51775800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:51775000-51776600	ZNF genes & repeats	Esophagus	oesophagus
48	chr15:51775000-51776600	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr15:51775000-51776600	ZNF genes & repeats	Ovary	ovary
50	chr15:51775000-51776800	ZNF genes & repeats	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links