Variant report

Variant	rs28428679
Chromosome Location	chr15:51913040-51913041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51880604..51882848-chr15:51911429..51913182,2	K562	blood:
2	chr15:51828885..51831420-chr15:51912654..51914673,2	K562	blood:
3	chr15:51898533..51902972-chr15:51911457..51915866,6	MCF-7	breast:
4	chr15:51893271..51898734-chr15:51911463..51916763,7	K562	blood:
5	chr15:51901451..51903803-chr15:51912032..51914694,2	K562	blood:
6	chr15:51904383..51907963-chr15:51911974..51914714,3	K562	blood:
7	chr15:51911576..51916583-chr15:52027382..52031699,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263437	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 221 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:216)

rs_ID	r²[population]
rs10220909	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1031664	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10438320	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10438321	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10467923	0.91[EUR][1000 genomes]
rs10467924	0.93[EUR][1000 genomes]
rs10519312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077361	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10775144	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1080394	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10851500	0.92[EUR][1000 genomes]
rs10851502	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11070851	0.82[EUR][1000 genomes]
rs11070852	0.93[EUR][1000 genomes]
rs11070853	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11070854	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11070855	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11070856	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11070857	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11070859	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11070860	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11070862	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11070863	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11630336	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11630743	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11630842	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11631408	0.83[EUR][1000 genomes]
rs11632853	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11633395	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11633713	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634039	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11634110	0.84[EUR][1000 genomes]
rs11634180	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11634999	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11635216	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11635592	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11636170	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11636428	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11638240	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12050586	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12050598	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12050600	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12101730	0.91[EUR][1000 genomes]
rs12101920	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12102203	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12372948	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12438892	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12440990	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12441167	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12441759	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12442725	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12442803	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12442947	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12443007	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12443362	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12592179	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12592653	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12592889	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12593979	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12913493	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17524813	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17603116	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17609666	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17609693	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17609791	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17609812	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17609917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902592	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1902593	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1902594	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2124592	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2124875	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2124876	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2124877	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124878	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124879	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2278988	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2278989	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305708	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414105	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2414106	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2414107	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2414109	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2414111	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2414113	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2414114	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28376817	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28393906	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28410165	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28415556	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28431083	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28576876	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28648597	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28680710	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28695624	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28795073	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28854610	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28866855	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2899475	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2899476	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2899477	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3736485	0.82[EUR][1000 genomes]
rs4143721	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4143722	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4143723	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4143724	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4144941	0.93[EUR][1000 genomes]
rs4438255	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4462537	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4545756	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4774589	0.83[EUR][1000 genomes]
rs4774591	0.85[EUR][1000 genomes]
rs4774592	0.93[EUR][1000 genomes]
rs4774593	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4774595	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4774596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774597	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4774598	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4775943	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4775944	0.92[EUR][1000 genomes]
rs4775946	0.92[EUR][1000 genomes]
rs4775951	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4775952	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4775953	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4775955	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4775956	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4775958	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4775959	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4775960	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4775961	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4775963	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775965	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55981933	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55982453	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56189052	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60060794	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62014659	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62016017	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6493498	0.83[EUR][1000 genomes]
rs6493499	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493500	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493501	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6493503	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6493505	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493510	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6493513	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67524810	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7161973	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7162361	0.92[EUR][1000 genomes]
rs7162412	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7162563	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7165887	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7167760	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7168546	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7168749	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7169753	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7169786	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7170217	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7170330	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7170444	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7171439	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7173880	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7174435	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7174495	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7174655	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7176044	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7177471	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177720	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7181470	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7182977	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7183435	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7183479	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7495962	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs750162	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs750163	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8023455	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8024506	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8028017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030121	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8030534	0.91[EUR][1000 genomes]
rs8031875	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8031903	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8034197	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8035135	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8036609	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8036821	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8036904	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8037167	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037340	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8037840	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8038203	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8038341	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8039073	0.84[EUR][1000 genomes]
rs8039255	0.81[AMR][1000 genomes]
rs8039835	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8040080	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040538	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8040648	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8041197	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8041514	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8042221	0.92[EUR][1000 genomes]
rs8042289	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8042840	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882385	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs882386	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9708186	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9744054	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920124	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920145	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944259	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9944263	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9944264	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs28428679	DMXL2	Cis_1M	lymphoblastoid	RTeQTL
rs28428679	DMXL2	cis	multi-tissue	Pritchard

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51903600-51913600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:51904200-51914000	Weak transcription	Lung	lung
3	chr15:51906200-51914000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:51906200-51914000	Weak transcription	Ovary	ovary
5	chr15:51906200-51914000	Weak transcription	Small Intestine	intestine
6	chr15:51906800-51914200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:51907000-51914000	Weak transcription	Psoas Muscle	Psoas
8	chr15:51911400-51913400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr15:51911400-51915800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:51911600-51913200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:51911600-51916000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr15:51911800-51914000	Weak transcription	Esophagus	oesophagus
13	chr15:51911800-51914400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:51912200-51914000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:51912200-51914200	Active TSS	Brain Germinal Matrix	brain
16	chr15:51912400-51913200	Active TSS	Stomach Smooth Muscle	stomach
17	chr15:51912400-51913400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:51912400-51913400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:51912400-51913600	Flanking Active TSS	GM12878-XiMat	blood
20	chr15:51912600-51913200	Flanking Active TSS	K562	blood
21	chr15:51912600-51913400	Active TSS	Brain Anterior Caudate	brain
22	chr15:51912600-51913800	Flanking Active TSS	A549	lung
23	chr15:51912600-51914400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:51912800-51913200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:51912800-51913200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr15:51912800-51913200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:51912800-51913200	Active TSS	Fetal Stomach	stomach
28	chr15:51912800-51913200	Active TSS	Monocytes-CD14+_RO01746	blood
29	chr15:51912800-51913400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:51912800-51913400	Flanking Active TSS	Fetal Brain Male	brain
31	chr15:51912800-51913400	Enhancers	Osteobl	bone
32	chr15:51912800-51913600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:51912800-51913600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:51912800-51913600	Flanking Active TSS	Brain Angular Gyrus	brain
35	chr15:51912800-51913600	Flanking Active TSS	Hela-S3	cervix
36	chr15:51912800-51913600	Enhancers	HepG2	liver
37	chr15:51912800-51913800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr15:51912800-51913800	Enhancers	NHEK	skin
39	chr15:51912800-51914000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:51912800-51914200	Active TSS	Primary B cells from cord blood	blood
41	chr15:51912800-51914400	Flanking Active TSS	Dnd41	blood
42	chr15:51912800-51914800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr15:51912800-51915000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:51912800-51915400	Active TSS	Primary T cells from cord blood	blood
45	chr15:51912800-51915400	Active TSS	Fetal Brain Female	brain
46	chr15:51912800-51915600	Active TSS	Brain Cingulate Gyrus	brain
47	chr15:51912800-51915800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:51912800-51915800	Active TSS	NHLF	lung
49	chr15:51912800-51916600	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr15:51913000-51913200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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