Variant report

Variant	rs2124879
Chromosome Location	chr15:51916833-51916834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:51916780-51916930	BE2_C	brain:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51914606..51918105-chr15:52309438..52311518,3	K562	blood:
2	chr15:51915397..51918003-chr15:52069309..52070981,2	MCF-7	breast:
3	chr15:51913469..51917109-chr15:52042794..52045514,3	MCF-7	breast:
4	chr15:51915278..51917337-chr15:51922529..51924335,2	K562	blood:
5	chr15:51693667..51695853-chr15:51915384..51917421,2	K562	blood:
6	chr15:51914529..51916927-chr15:52121179..52124043,2	MCF-7	breast:
7	chr15:51904892..51907829-chr15:51916271..51917973,2	MCF-7	breast:

No data

Variant related genes	Relation type
DMXL2	TF binding region
ENSG00000069956	Chromatin interaction
ENSG00000259438	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000259377	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000128872	Chromatin interaction

Extended variants
information (count: 226 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs10220909	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1031664	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10438320	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10438321	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10467923	0.90[EUR][1000 genomes]
rs10467924	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10519312	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10519313	0.81[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1077361	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10775144	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1080394	0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10851500	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10851502	0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11070851	0.81[EUR][1000 genomes]
rs11070852	0.92[EUR][1000 genomes]
rs11070853	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11070854	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11070855	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070856	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070857	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11070859	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070860	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070862	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070863	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11630336	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11630743	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11630842	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11631408	0.82[EUR][1000 genomes]
rs11632853	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11633395	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11633713	0.82[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11634039	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11634110	0.83[EUR][1000 genomes]
rs11634180	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11634999	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11635216	0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11635592	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11636170	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11636428	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11638240	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12050586	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12050598	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12050600	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12101730	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12101920	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12102203	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12372948	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438892	0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs12440990	0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12441167	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12441759	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12442725	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12442803	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12442947	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12443007	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12443362	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12592179	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12592653	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592889	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593979	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12913493	0.81[EUR][1000 genomes]
rs17524813	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17603116	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17609666	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17609693	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17609791	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17609812	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17609917	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17609924	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1902592	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1902593	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1902594	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2124592	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2124875	0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2124876	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2124877	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2124878	0.81[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2278988	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278989	0.81[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2278990	0.81[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2305708	0.82[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2414105	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414106	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414107	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414109	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414111	0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2414113	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414114	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28376817	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28393906	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28410165	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28415556	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28428679	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28431083	0.86[EUR][1000 genomes]
rs28576876	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28648597	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28680710	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28695624	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28795073	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28854610	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28866855	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2899475	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2899476	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2899477	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3736485	0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs4143721	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4143722	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4143723	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4143724	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4144941	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4359386	0.88[ASN][1000 genomes]
rs4438255	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4462536	0.88[ASN][1000 genomes]
rs4462537	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4545756	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4774589	0.82[EUR][1000 genomes]
rs4774590	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4774591	0.84[EUR][1000 genomes]
rs4774592	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4774593	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4774595	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4774596	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4774597	0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4774598	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4775943	0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4775944	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775946	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4775951	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775952	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4775953	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775955	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775956	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4775958	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775959	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775960	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775961	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775963	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4775965	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4775966	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55981933	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55982453	0.85[EUR][1000 genomes]
rs56189052	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60060794	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62014659	0.87[EUR][1000 genomes]
rs62016017	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6493498	0.82[EUR][1000 genomes]
rs6493499	0.86[EUR][1000 genomes]
rs6493500	0.86[EUR][1000 genomes]
rs6493501	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493503	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493505	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493510	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493513	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67524810	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7161973	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162361	0.91[EUR][1000 genomes]
rs7162412	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7162563	0.86[EUR][1000 genomes]
rs7165887	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7167760	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7168546	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7168749	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7169753	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7169786	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7170217	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170330	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7170444	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7171439	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7173880	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7174435	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7174495	0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7174655	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7176044	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7177471	0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7177720	0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7181470	0.85[EUR][1000 genomes]
rs7182977	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7183435	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7183479	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7495962	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs750162	0.82[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs750163	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8023455	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8024506	0.86[EUR][1000 genomes]
rs8028017	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8030121	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8030534	0.90[EUR][1000 genomes]
rs8031875	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8031903	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034197	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8035135	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8036609	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8036821	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8036904	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8037167	0.81[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8037340	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8037840	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8038203	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8038341	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8039073	0.83[EUR][1000 genomes]
rs8039835	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8040080	0.82[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8040538	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8040648	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041197	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8041514	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8042221	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8042289	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8042840	0.81[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs882385	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs882386	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs930920	0.85[YRI][hapmap]
rs9708186	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9744054	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9806598	0.83[ASN][1000 genomes]
rs9920124	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9920145	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9944241	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9944259	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944263	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9944264	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2124879	DMXL2	Cis_1M	lymphoblastoid	RTeQTL
rs2124879	DMXL2	cis	multi-tissue	Pritchard

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51915800-51917000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:51915800-51918000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:51916000-51917000	Enhancers	Fetal Intestine Large	intestine
4	chr15:51916000-51917000	Enhancers	Fetal Intestine Small	intestine
5	chr15:51916000-51919200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:51916200-51917000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr15:51916200-51917000	Enhancers	K562	blood
8	chr15:51916200-51917200	Enhancers	GM12878-XiMat	blood
9	chr15:51916200-51918000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:51916400-51917000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr15:51916400-51920600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:51916400-51921600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:51916600-51917000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr15:51916600-51918200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr15:51916800-51917000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr15:51916800-51917000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr15:51916800-51917800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Variant report

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