Variant report

Variant	rs4898840
Chromosome Location	chr14:55089422-55089423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55032278..55034681-chr14:55088855..55090824,2	K562	blood:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1187590	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1187594	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1187596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1211769	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1539116	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17127681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253494	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17253556	1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17832209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957888	1.00[ASN][1000 genomes]
rs1998671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147537	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs28455122	1.00[ASN][1000 genomes]
rs4548794	1.00[ASN][1000 genomes]
rs55742724	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55816518	1.00[ASN][1000 genomes]
rs56110021	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133056	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56220434	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294338	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59630936	1.00[ASN][1000 genomes]
rs61975126	1.00[ASN][1000 genomes]
rs61975137	1.00[ASN][1000 genomes]
rs880120	0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4898840	WDHD1	cis	parietal	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55057000-55091000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:55070400-55116200	Weak transcription	HMEC	breast
3	chr14:55073400-55091000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:55073800-55092000	Weak transcription	Spleen	Spleen
5	chr14:55074000-55089600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:55074000-55089600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:55074000-55091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:55077600-55092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:55078200-55091200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:55078400-55091200	Weak transcription	Fetal Stomach	stomach
11	chr14:55078800-55094000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:55078800-55094000	Weak transcription	HSMMtube	muscle
13	chr14:55083400-55092000	Weak transcription	Gastric	stomach
14	chr14:55084600-55103000	Weak transcription	NHEK	skin
15	chr14:55084800-55091800	Weak transcription	NH-A	brain
16	chr14:55086800-55089800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:55087200-55092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:55087600-55089600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:55087600-55090400	Enhancers	HUVEC	blood vessel
20	chr14:55087600-55094000	Enhancers	NHLF	lung
21	chr14:55087600-55094200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:55088000-55089800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:55088000-55089800	Enhancers	NHDF-Ad	bronchial
24	chr14:55088200-55090600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr14:55088400-55089600	Enhancers	Adipose Nuclei	Adipose
26	chr14:55088400-55091800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr14:55088600-55090200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr14:55088800-55090200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:55089000-55090000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:55089000-55090000	Enhancers	Aorta	Aorta
31	chr14:55089000-55090000	Enhancers	Fetal Heart	heart
32	chr14:55089000-55090000	Enhancers	GM12878-XiMat	blood
33	chr14:55089000-55090800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:55089000-55093600	Enhancers	HepG2	liver
35	chr14:55089200-55090000	Enhancers	Primary B cells from peripheral blood	blood
36	chr14:55089200-55090000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:55089200-55090000	Enhancers	Colon Smooth Muscle	Colon
38	chr14:55089200-55090000	Enhancers	Left Ventricle	heart
39	chr14:55089200-55091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:55089200-55091600	Weak transcription	Osteobl	bone
41	chr14:55089200-55094200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr14:55089400-55089600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chr14:55089400-55089600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:55089400-55089600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr14:55089400-55089600	Enhancers	Pancreas	Pancrea
46	chr14:55089400-55089800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:55089400-55089800	Genic enhancers	Fetal Muscle Leg	muscle
48	chr14:55089400-55089800	Enhancers	Lung	lung
49	chr14:55089400-55090000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr14:55089400-55090000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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