Variant report

Variant	rs61975137
Chromosome Location	chr14:55094393-55094394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55092055..55094669-chr14:55116255..55118768,2	MCF-7	breast:
2	chr14:55094194..55096003-chr14:55099035..55101597,2	MCF-7	breast:
3	chr14:55094085..55095641-chr14:55105830..55108164,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17127681	1.00[ASN][1000 genomes]
rs17253494	1.00[ASN][1000 genomes]
rs17253556	0.92[ASN][1000 genomes]
rs17832209	1.00[ASN][1000 genomes]
rs1957888	1.00[ASN][1000 genomes]
rs1998671	1.00[ASN][1000 genomes]
rs28455122	1.00[ASN][1000 genomes]
rs4548794	1.00[ASN][1000 genomes]
rs4898840	1.00[ASN][1000 genomes]
rs55742724	1.00[ASN][1000 genomes]
rs55816518	1.00[ASN][1000 genomes]
rs56110021	1.00[ASN][1000 genomes]
rs56133056	1.00[ASN][1000 genomes]
rs56220434	1.00[ASN][1000 genomes]
rs56294338	1.00[ASN][1000 genomes]
rs59630936	1.00[ASN][1000 genomes]
rs61975126	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55070400-55116200	Weak transcription	HMEC	breast
2	chr14:55084600-55103000	Weak transcription	NHEK	skin
3	chr14:55089600-55095400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:55090000-55094600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55090800-55094400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:55091000-55094400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:55091200-55094600	Enhancers	Fetal Heart	heart
8	chr14:55091200-55094800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr14:55091200-55095000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:55091200-55095000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:55091200-55095200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:55091200-55095200	Enhancers	Fetal Stomach	stomach
13	chr14:55091400-55095000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:55091600-55094800	Weak transcription	Brain Germinal Matrix	brain
15	chr14:55091600-55095200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr14:55092000-55094800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:55092000-55095200	Enhancers	Spleen	Spleen
18	chr14:55092200-55094600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:55092200-55095000	Weak transcription	Liver	Liver
20	chr14:55092400-55095200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:55092600-55094600	Weak transcription	Fetal Intestine Small	intestine
22	chr14:55092600-55094800	Weak transcription	Small Intestine	intestine
23	chr14:55092600-55095400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:55092800-55095200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:55092800-55095400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:55093000-55094600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr14:55093400-55094800	Weak transcription	Fetal Intestine Large	intestine
28	chr14:55093400-55094800	Weak transcription	Lung	lung
29	chr14:55093400-55102800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:55093600-55094400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr14:55093600-55094400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:55093600-55095200	Enhancers	Aorta	Aorta
33	chr14:55093600-55095600	Enhancers	Fetal Muscle Leg	muscle
34	chr14:55093600-55095800	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr14:55093800-55095000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:55093800-55095200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:55093800-55095200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:55093800-55095200	Flanking Active TSS	HUVEC	blood vessel
39	chr14:55093800-55095400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:55093800-55095400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:55094000-55094400	Enhancers	H9 Cell Line	embryonic stem cell
42	chr14:55094000-55094400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:55094000-55094400	Enhancers	Primary T cells fromperipheralblood	blood
44	chr14:55094000-55094400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr14:55094000-55094400	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr14:55094000-55094400	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr14:55094000-55094400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr14:55094000-55094400	Flanking Active TSS	Right Atrium	heart
49	chr14:55094000-55094600	Enhancers	HSMM	muscle
50	chr14:55094000-55094600	Enhancers	HSMMtube	muscle

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