Variant report

Variant	rs4907097
Chromosome Location	chr1:85261925-85261926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1077561	0.82[ASN][1000 genomes]
rs10782526	0.88[ASN][1000 genomes]
rs10782527	0.94[ASN][1000 genomes]
rs10873656	0.82[ASN][1000 genomes]
rs11161451	0.81[ASN][1000 genomes]
rs11161454	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.99[ASN][1000 genomes]
rs1326001	0.81[ASN][1000 genomes]
rs2013656	0.81[ASN][1000 genomes]
rs4907007	0.81[JPT][hapmap]
rs4907096	0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs753504	0.80[ASN][1000 genomes]
rs9324136	0.88[ASN][1000 genomes]
rs9324140	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes]
rs943046	0.80[ASN][1000 genomes]
rs9662836	0.82[ASN][1000 genomes]
rs9724696	0.83[ASN][1000 genomes]
rs9727277	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4907097	LPAR3	cis	cerebellum	SCAN
rs4907097	MCOLN3	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85251800-85263400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:85261200-85262200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:85261200-85262200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:85261400-85262000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:85261400-85262400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:85261600-85262200	Enhancers	HepG2	liver
8	chr1:85261600-85262800	Weak transcription	Fetal Heart	heart
9	chr1:85261600-85263000	Weak transcription	Esophagus	oesophagus
10	chr1:85261600-85263000	Weak transcription	Left Ventricle	heart
11	chr1:85261600-85263400	Active TSS	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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