Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1077561	0.81[ASN][1000 genomes]
rs1077775	0.85[ASN][1000 genomes]
rs10782526	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782527	0.93[ASN][1000 genomes]
rs10873656	0.82[ASN][1000 genomes]
rs11161451	0.81[ASN][1000 genomes]
rs11161452	0.86[ASN][1000 genomes]
rs11161454	0.82[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs1326001	0.81[ASN][1000 genomes]
rs1326004	0.85[ASN][1000 genomes]
rs2013656	0.81[ASN][1000 genomes]
rs4907002	0.86[ASN][1000 genomes]
rs4907096	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4907097	0.88[ASN][1000 genomes]
rs753504	0.80[ASN][1000 genomes]
rs9324135	0.85[ASN][1000 genomes]
rs9324140	0.82[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs9662836	0.82[ASN][1000 genomes]
rs9724696	0.81[ASN][1000 genomes]
rs9727277	0.81[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9324136	MCOLN2	cis	cerebellum	SCAN
rs9324136	WDR63	cis	parietal	SCAN
rs9324136	SEP15	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85250200-85251800	Enhancers	Stomach Smooth Muscle	stomach
3	chr1:85250400-85252000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:85250400-85252000	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:85250600-85251800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:85250600-85251800	Enhancers	Colon Smooth Muscle	Colon
7	chr1:85250600-85251800	Enhancers	HMEC	breast
8	chr1:85250800-85251600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:85250800-85251600	Enhancers	Brain Hippocampus Middle	brain
10	chr1:85250800-85251800	Enhancers	Fetal Stomach	stomach
11	chr1:85250800-85252400	Enhancers	Fetal Lung	lung
12	chr1:85251000-85252000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr1:85251200-85251600	Enhancers	Fetal Heart	heart
14	chr1:85251200-85261600	Weak transcription	Right Atrium	heart
15	chr1:85251400-85255000	Weak transcription	NHEK	skin

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