Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1077775	0.95[ASN][1000 genomes]
rs10782526	0.81[ASN][1000 genomes]
rs10782527	0.87[ASN][1000 genomes]
rs10873656	0.99[ASN][1000 genomes]
rs11161451	0.99[ASN][1000 genomes]
rs11161452	0.95[ASN][1000 genomes]
rs11161454	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1326001	0.99[ASN][1000 genomes]
rs1326004	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2013634	0.80[EUR][1000 genomes]
rs2013656	0.99[ASN][1000 genomes]
rs4907002	0.95[ASN][1000 genomes]
rs4907095	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4907096	0.81[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4907097	0.82[ASN][1000 genomes]
rs753504	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9324134	0.92[ASN][1000 genomes]
rs9324135	0.93[ASN][1000 genomes]
rs9324136	0.81[ASN][1000 genomes]
rs9324140	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs943046	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9662836	0.99[ASN][1000 genomes]
rs9724696	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9727277	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516470	chr1:85239564-85241298	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1077561	LPAR3	cis	cerebellum	SCAN
rs1077561	WDR63	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85238600-85242000	Weak transcription	Osteobl	bone
2	chr1:85239000-85241400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:85239200-85244800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:85240000-85241600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:85240200-85245200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:85240400-85244800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:85240600-85243200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:85240800-85241400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr1:85240800-85245000	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:85240800-85246200	Weak transcription	Esophagus	oesophagus
11	chr1:85241000-85243200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:85241000-85247600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:85241200-85241400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:85241200-85244400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:85241200-85245000	Weak transcription	Brain Anterior Caudate	brain
17	chr1:85241200-85245400	Weak transcription	HMEC	breast

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