Variant report

Variant	rs9324134
Chromosome Location	chr1:85244833-85244834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1077561	0.92[ASN][1000 genomes]
rs1077775	0.89[ASN][1000 genomes]
rs10782527	0.81[ASN][1000 genomes]
rs10873656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11161451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11161452	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11161454	0.81[JPT][hapmap]
rs1326001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326004	0.89[ASN][1000 genomes]
rs2013656	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4907002	0.90[ASN][1000 genomes]
rs4907095	0.82[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs4907096	0.81[JPT][hapmap]
rs753504	0.92[ASN][1000 genomes]
rs9324135	0.88[ASN][1000 genomes]
rs9324140	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs943046	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9662836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9724696	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9727277	0.92[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85240200-85245200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:85240800-85245000	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:85240800-85246200	Weak transcription	Esophagus	oesophagus
4	chr1:85241000-85247600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:85241200-85245000	Weak transcription	Brain Anterior Caudate	brain
7	chr1:85241200-85245400	Weak transcription	HMEC	breast
8	chr1:85241600-85245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:85243000-85245400	Weak transcription	Osteobl	bone
10	chr1:85243200-85245200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:85243800-85245400	Weak transcription	Fetal Thymus	thymus
12	chr1:85244000-85246800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:85244200-85245400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:85244200-85246600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:85244400-85245400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:85244600-85245600	Weak transcription	NHEK	skin
17	chr1:85244800-85245000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:85244800-85246400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:85244800-85246600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr1:85244800-85246600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:85244800-85246600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:85244800-85246600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells	blood
24	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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