Variant report

Variant	rs10873656
Chromosome Location	chr1:85245596-85245597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85238570..85240771-chr1:85245143..85248001,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1077561	0.99[ASN][1000 genomes]
rs1077775	0.95[ASN][1000 genomes]
rs10782526	0.82[ASN][1000 genomes]
rs10782527	0.87[ASN][1000 genomes]
rs11161451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11161452	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11161454	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1326001	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1326004	0.95[ASN][1000 genomes]
rs2013656	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4907002	0.96[ASN][1000 genomes]
rs4907095	0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4907096	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4907097	0.82[ASN][1000 genomes]
rs753504	0.98[ASN][1000 genomes]
rs9324134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9324135	0.94[ASN][1000 genomes]
rs9324136	0.82[ASN][1000 genomes]
rs9324140	0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs943046	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9662836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9724696	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9727277	0.99[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85240800-85246200	Weak transcription	Esophagus	oesophagus
2	chr1:85241000-85247600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:85244000-85246800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:85244200-85246600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:85244600-85245600	Weak transcription	NHEK	skin
7	chr1:85244800-85246400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:85244800-85246600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr1:85244800-85246600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:85244800-85246600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:85244800-85246600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:85245000-85245600	Enhancers	Brain Anterior Caudate	brain
15	chr1:85245000-85246200	Enhancers	Brain Hippocampus Middle	brain
16	chr1:85245000-85246200	Enhancers	NHDF-Ad	bronchial
17	chr1:85245000-85246600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:85245000-85246600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:85245000-85247800	Enhancers	Primary T cells from cord blood	blood
20	chr1:85245200-85246200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:85245200-85246400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr1:85245200-85246400	Enhancers	Brain Cingulate Gyrus	brain
23	chr1:85245200-85246600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:85245400-85246200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:85245400-85246200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:85245400-85246200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr1:85245400-85246200	Enhancers	Osteobl	bone
28	chr1:85245400-85246400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr1:85245400-85246400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:85245400-85246400	Enhancers	Fetal Thymus	thymus
31	chr1:85245400-85246600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr1:85245400-85246600	Enhancers	HMEC	breast
33	chr1:85245400-85247800	Weak transcription	Brain Inferior Temporal Lobe	brain

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