Variant report

Variant	rs11161452
Chromosome Location	chr1:85246018-85246019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85238570..85240771-chr1:85245143..85248001,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1077561	0.95[ASN][1000 genomes]
rs1077775	0.99[ASN][1000 genomes]
rs10782526	0.86[ASN][1000 genomes]
rs10782527	0.84[ASN][1000 genomes]
rs10873656	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11161451	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11161454	0.82[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs11576745	0.81[ASN][1000 genomes]
rs1326001	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1326004	0.99[ASN][1000 genomes]
rs2013656	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2389775	0.81[ASN][1000 genomes]
rs4907002	1.00[ASN][1000 genomes]
rs4907095	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4907096	0.86[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs753504	0.94[ASN][1000 genomes]
rs9324134	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324135	0.98[ASN][1000 genomes]
rs9324136	0.86[ASN][1000 genomes]
rs9324140	0.82[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs943046	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9662836	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9724696	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9727277	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3416405	chr1:85245916-85246446	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11161452	LPAR3	cis	cerebellum	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85240800-85246200	Weak transcription	Esophagus	oesophagus
2	chr1:85241000-85247600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:85244000-85246800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:85244200-85246600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:85244800-85246400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:85244800-85246600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:85244800-85246600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:85244800-85246600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:85244800-85246600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:85245000-85246200	Enhancers	Brain Hippocampus Middle	brain
14	chr1:85245000-85246200	Enhancers	NHDF-Ad	bronchial
15	chr1:85245000-85246600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:85245000-85246600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:85245000-85247800	Enhancers	Primary T cells from cord blood	blood
18	chr1:85245200-85246200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:85245200-85246400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr1:85245200-85246400	Enhancers	Brain Cingulate Gyrus	brain
21	chr1:85245200-85246600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:85245400-85246200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:85245400-85246200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:85245400-85246200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr1:85245400-85246200	Enhancers	Osteobl	bone
26	chr1:85245400-85246400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr1:85245400-85246400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:85245400-85246400	Enhancers	Fetal Thymus	thymus
29	chr1:85245400-85246600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr1:85245400-85246600	Enhancers	HMEC	breast
31	chr1:85245400-85247800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:85245600-85246200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:85245600-85246200	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr1:85245600-85246200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr1:85245600-85246200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr1:85245600-85246200	Enhancers	Stomach Smooth Muscle	stomach
37	chr1:85245600-85246400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr1:85245600-85246400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:85245600-85246400	Enhancers	NHEK	skin
40	chr1:85245800-85246200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr1:85245800-85246200	Enhancers	NHLF	lung
42	chr1:85245800-85246400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:85245800-85246400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:85246000-85246200	Enhancers	Brain Angular Gyrus	brain
45	chr1:85246000-85246200	Enhancers	Brain Anterior Caudate	brain
46	chr1:85246000-85250600	Weak transcription	Colon Smooth Muscle	Colon

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