Variant report

Variant	rs9324135
Chromosome Location	chr1:85247668-85247669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85238570..85240771-chr1:85245143..85248001,2	K562	blood:
2	chr1:85236447..85238447-chr1:85246422..85249136,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1077561	0.93[ASN][1000 genomes]
rs1077775	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10782526	0.85[ASN][1000 genomes]
rs10782527	0.83[ASN][1000 genomes]
rs10873656	0.94[ASN][1000 genomes]
rs11161451	0.93[ASN][1000 genomes]
rs11161452	0.98[ASN][1000 genomes]
rs11161454	0.81[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1326001	0.93[ASN][1000 genomes]
rs1326004	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2013656	0.93[ASN][1000 genomes]
rs4907002	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4907095	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs4907096	0.88[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs753504	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9324134	0.88[ASN][1000 genomes]
rs9324136	0.85[ASN][1000 genomes]
rs9324140	0.81[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs943046	0.91[ASN][1000 genomes]
rs9662836	0.94[ASN][1000 genomes]
rs9724696	0.93[ASN][1000 genomes]
rs9727277	0.93[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9324135	WDR63	cis	parietal	SCAN
rs9324135	RPF1	cis	cerebellum	SCAN
rs9324135	LPAR3	cis	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85245000-85247800	Enhancers	Primary T cells from cord blood	blood
3	chr1:85245400-85247800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:85246000-85250600	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:85246200-85247800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:85246200-85247800	Weak transcription	Brain Angular Gyrus	brain
7	chr1:85246200-85248000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:85246200-85248000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:85246200-85248200	Weak transcription	NHDF-Ad	bronchial
10	chr1:85246200-85250200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:85246400-85247800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:85246400-85248000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:85246400-85250800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:85246400-85250800	Weak transcription	NHEK	skin
15	chr1:85246600-85248000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:85246600-85250400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:85246600-85250600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:85246600-85250600	Weak transcription	HMEC	breast
19	chr1:85246800-85248000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:85247200-85248800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr1:85247400-85247800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:85247400-85247800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr1:85247400-85248200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr1:85247600-85247800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:85247600-85247800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr1:85247600-85247800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:85247600-85247800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr1:85247600-85247800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr1:85247600-85247800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr1:85247600-85247800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr1:85247600-85247800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr1:85247600-85247800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:85247600-85247800	Enhancers	Brain Hippocampus Middle	brain
34	chr1:85247600-85248000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr1:85247600-85248000	Enhancers	Primary T cells fromperipheralblood	blood
36	chr1:85247600-85248000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr1:85247600-85248200	Enhancers	Fetal Thymus	thymus
38	chr1:85247600-85248400	Active TSS	Brain Anterior Caudate	brain

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