Variant report

Variant	rs4907095
Chromosome Location	chr1:85238207-85238208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:84397079..84397589-chr1:85237722..85238344,2	MCF-7	breast:
2	chr1:84853389..84854043-chr1:85237940..85238620,2	K562	blood:
3	chr1:85237750..85238306-chr21:44250897..44251397,2	NB4	blood:
4	chr1:85218958..85219484-chr1:85237990..85238685,2	K562	blood:
5	chr1:85134034..85134566-chr1:85237896..85238656,2	MCF-7	breast:
6	chr1:85219156..85219770-chr1:85237701..85238263,2	MCF-7	breast:
7	chr1:85238005..85238693-chr1:85400870..85401458,2	K562	blood:
8	chr1:85086327..85087159-chr1:85237711..85238512,3	K562	blood:
9	chr1:85235556..85238288-chr20:47536912..47539805,2	MCF-7	breast:
10	chr1:85236447..85238447-chr1:85246422..85249136,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124198	Chromatin interaction

rs_ID	r²[population]
rs1077561	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1077775	0.89[ASN][1000 genomes]
rs10782527	0.81[ASN][1000 genomes]
rs10873656	0.92[ASN][1000 genomes]
rs11161451	0.93[ASN][1000 genomes]
rs11161452	0.89[ASN][1000 genomes]
rs1326001	0.93[ASN][1000 genomes]
rs1326004	0.89[ASN][1000 genomes]
rs2013656	0.93[ASN][1000 genomes]
rs4907002	0.89[ASN][1000 genomes]
rs753504	0.92[ASN][1000 genomes]
rs9324134	0.86[ASN][1000 genomes]
rs9324135	0.87[ASN][1000 genomes]
rs9324140	0.81[ASN][1000 genomes]
rs943046	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9662836	0.92[ASN][1000 genomes]
rs9724696	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9727277	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85235600-85240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:85237600-85238600	Enhancers	Fetal Brain Male	brain
4	chr1:85237800-85238400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:85237800-85239200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:85237800-85239200	Enhancers	Fetal Heart	heart
7	chr1:85237800-85239800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:85237800-85240000	Enhancers	NHEK	skin
9	chr1:85238000-85239600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:85238000-85239800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:85238000-85240800	Enhancers	Fetal Brain Female	brain
12	chr1:85238000-85241200	Enhancers	HMEC	breast
13	chr1:85238200-85238400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:85238200-85238400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:85238200-85238400	Enhancers	Fetal Lung	lung
16	chr1:85238200-85238400	Enhancers	Stomach Mucosa	stomach
17	chr1:85238200-85238600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:85238200-85238600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:85238200-85238600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr1:85238200-85238600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr1:85238200-85238600	Enhancers	Brain Cingulate Gyrus	brain
22	chr1:85238200-85238600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:85238200-85238600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:85238200-85238600	Enhancers	NHDF-Ad	bronchial
25	chr1:85238200-85238600	Enhancers	NHLF	lung
26	chr1:85238200-85238600	Enhancers	Osteobl	bone
27	chr1:85238200-85239000	Enhancers	Brain Hippocampus Middle	brain
28	chr1:85238200-85239000	Enhancers	Stomach Smooth Muscle	stomach
29	chr1:85238200-85239200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:85238200-85239400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:85238200-85239400	Enhancers	Brain Germinal Matrix	brain
32	chr1:85238200-85239800	Enhancers	Fetal Intestine Small	intestine
33	chr1:85238200-85240200	Enhancers	Esophagus	oesophagus
34	chr1:85238200-85240600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr1:85238200-85241000	Enhancers	Cortex derived primary cultured neurospheres	brain

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