Variant report

Variant	rs943046
Chromosome Location	chr1:85240599-85240600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85238570..85240771-chr1:85245143..85248001,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1077561	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1077775	0.93[ASN][1000 genomes]
rs10782527	0.85[ASN][1000 genomes]
rs10873656	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11161451	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11161452	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326001	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1326004	0.93[ASN][1000 genomes]
rs2013634	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2013656	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4907002	0.93[ASN][1000 genomes]
rs4907095	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4907097	0.80[ASN][1000 genomes]
rs753504	0.96[ASN][1000 genomes]
rs9324134	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324135	0.91[ASN][1000 genomes]
rs9324140	0.85[ASN][1000 genomes]
rs9662836	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9724696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9727277	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516470	chr1:85239564-85241298	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85238000-85240800	Enhancers	Fetal Brain Female	brain
2	chr1:85238000-85241200	Enhancers	HMEC	breast
3	chr1:85238200-85240600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:85238200-85241000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:85238600-85242000	Weak transcription	Osteobl	bone
6	chr1:85239000-85241400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:85239200-85244800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:85239400-85240600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:85239400-85240800	Weak transcription	Brain Germinal Matrix	brain
10	chr1:85239600-85241200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:85239600-85241200	Enhancers	Brain Anterior Caudate	brain
12	chr1:85239600-85241200	Enhancers	Pancreas	Pancrea
13	chr1:85239800-85240800	Enhancers	Fetal Brain Male	brain
14	chr1:85239800-85241200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr1:85240000-85241200	Weak transcription	NHEK	skin
16	chr1:85240000-85241600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr1:85240200-85240600	Weak transcription	Esophagus	oesophagus
18	chr1:85240200-85240800	Enhancers	Brain Hippocampus Middle	brain
19	chr1:85240200-85241000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:85240200-85245200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:85240400-85240600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:85240400-85241000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:85240400-85241000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:85240400-85244800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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