Variant report

Variant	rs4945761
Chromosome Location	chr6:107221324-107221325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:107221181-107221767	MCF-7	breast:	n/a	n/a
2	POLR2A	chr6:107221052-107222039	K562	blood:	n/a	n/a
3	TCF12	chr6:107221125-107221920	MCF-7	breast:	n/a	n/a
4	TCF12	chr6:107221093-107222012	MCF-7	breast:	n/a	n/a
5	EP300	chr6:107221180-107221837	MCF-7	breast:	n/a	chr6:107221727-107221741
6	HDAC2	chr6:107221165-107221904	MCF-7	breast:	n/a	chr6:107221603-107221617
7	NR2F2	chr6:107221150-107221868	MCF-7	breast:	n/a	n/a
8	HDAC2	chr6:107221234-107221832	MCF-7	breast:	n/a	chr6:107221603-107221617
9	RAD21	chr6:107221080-107221841	MCF-7	breast:	n/a	n/a
10	ELF1	chr6:107221213-107221810	MCF-7	breast:	n/a	n/a
11	EP300	chr6:107221160-107221862	MCF-7	breast:	n/a	chr6:107221727-107221741
12	RAD21	chr6:107221113-107221839	MCF-7	breast:	n/a	n/a
13	GATA3	chr6:107221147-107221878	MCF-7	breast:	n/a	chr6:107221729-107221739 chr6:107221812-107221821
14	SIN3AK20	chr6:107221049-107222366	MCF-7	breast:	n/a	n/a
15	CEBPB	chr6:107221306-107221903	MCF-7	breast:	n/a	n/a
16	FOXM1	chr6:107221168-107221862	MCF-7	breast:	n/a	n/a
17	GATA3	chr6:107221164-107221985	MCF-7	breast:	n/a	chr6:107221729-107221739 chr6:107221812-107221821

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107191814..107196655-chr6:107220470..107222924,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235142	TF binding region
ENSG00000235142	Chromatin interaction

rs_ID	r²[population]
rs10485220	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12525578	0.83[EUR][1000 genomes]
rs2236020	0.84[EUR][1000 genomes]
rs4946787	0.88[EUR][1000 genomes]
rs56688330	0.84[EUR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107218800-107222800	Enhancers	Pancreas	Pancrea
2	chr6:107219800-107222600	Enhancers	Fetal Kidney	kidney
3	chr6:107219800-107222600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:107220200-107222400	Enhancers	Placenta	Placenta
5	chr6:107220200-107222800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:107220400-107223600	Enhancers	Liver	Liver
7	chr6:107220600-107222800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:107220800-107222000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:107221000-107221600	Enhancers	GM12878-XiMat	blood
10	chr6:107221000-107222000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:107221000-107222400	Enhancers	HMEC	breast
12	chr6:107221200-107221400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:107221200-107221600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:107221200-107221600	Enhancers	Gastric	stomach
15	chr6:107221200-107221800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:107221200-107221800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:107221200-107222000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:107221200-107222400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:107221200-107222400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:107221200-107222400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:107221200-107222400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:107221200-107222600	Enhancers	Fetal Muscle Trunk	muscle
23	chr6:107221200-107222800	Enhancers	Esophagus	oesophagus

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