Variant report

Variant	rs10485220
Chromosome Location	chr6:107197039-107197040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:107196885-107197085	MCF10A-Er-Src	breast:	n/a	n/a
2	MAX	chr6:107196439-107197064	H1-hESC	embryonic stem cell:	n/a	n/a
3	KAP1	chr6:107196889-107197894	U2OS	brain:	n/a	n/a
4	ZNF143	chr6:107196332-107197041	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:107189266..107192356-chr6:107195011..107199023,4	K562	blood:
2	chr6:107074480..107076734-chr6:107196823..107198959,2	MCF-7	breast:
3	chr6:107195540..107198974-chr6:107203128..107206531,3	MCF-7	breast:
4	chr6:107191864..107193418-chr6:107195450..107197990,2	MCF-7	breast:
5	chr6:107196494..107198311-chr6:107201583..107205137,3	MCF-7	breast:
6	chr6:107189266..107191928-chr6:107196041..107199023,3	K562	blood:
7	chr4:77876919..77878897-chr6:107196410..107199207,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RTN4IP1-2	chr6:107187576-107197663	NONHSAT114255

No data

Variant related genes	Relation type
ENSG00000235142	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12525578	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2236020	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4945761	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4946787	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56688330	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62427566	0.80[AMR][1000 genomes]
rs62427568	0.83[AMR][1000 genomes]
rs9480704	0.84[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107179800-107197600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:107191000-107200800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:107191200-107200400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:107192800-107200000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:107193000-107198400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:107193800-107199200	Weak transcription	Liver	Liver
7	chr6:107194200-107197600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:107194200-107197800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:107194200-107198400	Weak transcription	Esophagus	oesophagus
10	chr6:107194400-107197600	Weak transcription	Colonic Mucosa	Colon
11	chr6:107194400-107199400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:107194400-107199400	Weak transcription	Psoas Muscle	Psoas
13	chr6:107195000-107198800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:107195200-107198400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:107195200-107199400	Weak transcription	HSMMtube	muscle
16	chr6:107195200-107200200	Enhancers	A549	lung
17	chr6:107195400-107197600	Weak transcription	Placenta	Placenta
18	chr6:107195400-107197600	Enhancers	Hela-S3	cervix
19	chr6:107195400-107197800	Weak transcription	Stomach Mucosa	stomach
20	chr6:107195400-107198000	Weak transcription	HSMM	muscle
21	chr6:107195800-107199000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:107196000-107197800	Enhancers	HepG2	liver
23	chr6:107196000-107198400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:107196000-107199400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:107196000-107200000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:107196200-107197400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr6:107196200-107198200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:107196200-107198600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:107196200-107198600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:107196200-107198800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:107196200-107199200	Enhancers	Pancreas	Pancrea
32	chr6:107196200-107200200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:107196200-107200200	Enhancers	NHEK	skin
34	chr6:107196200-107200400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:107196400-107197800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:107196400-107198200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr6:107196400-107198600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:107196800-107197200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr6:107196800-107197400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:107196800-107197800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:107196800-107198000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:107196800-107200200	Enhancers	Fetal Muscle Leg	muscle
43	chr6:107196800-107200600	Enhancers	HMEC	breast
44	chr6:107197000-107198400	Weak transcription	Gastric	stomach

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