Variant report

Variant	rs9480704
Chromosome Location	chr6:107193215-107193216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:107191864..107193418-chr6:107195450..107197990,2	MCF-7	breast:
2	chr6:107128712..107130590-chr6:107191547..107193827,2	MCF-7	breast:
3	chr6:107191814..107196655-chr6:107220470..107222924,4	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RTN4IP1-2	chr6:107187576-107197663	NONHSAT114255
2	lnc-RTN4IP1-2	chr6:107192816-107193879	ENSG00000235142.3
3	lnc-RTN4IP1-2	chr6:107190755-107195163	NONHSAT114264
4	lnc-RTN4IP1-2	chr6:107193119-107195163	NONHSAT114265

No data

Variant related genes	Relation type
ENSG00000235142	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10485220	0.84[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap]
rs2236020	0.89[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4946787	0.88[ASN][1000 genomes]
rs56688330	0.88[ASN][1000 genomes]
rs62427566	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62427568	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107179800-107197600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:107191000-107200800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:107191200-107200400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:107191400-107195800	Enhancers	HMEC	breast
5	chr6:107191400-107195800	Enhancers	NHEK	skin
6	chr6:107191600-107195400	Enhancers	Placenta	Placenta
7	chr6:107192000-107195000	Enhancers	HepG2	liver
8	chr6:107192200-107194600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr6:107192200-107195200	Enhancers	Fetal Intestine Small	intestine
10	chr6:107192200-107195400	Enhancers	Fetal Intestine Large	intestine
11	chr6:107192400-107193400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:107192400-107193600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:107192400-107193600	Enhancers	Hela-S3	cervix
14	chr6:107192400-107193800	Enhancers	A549	lung
15	chr6:107192600-107193600	Weak transcription	Pancreas	Pancrea
16	chr6:107192600-107194000	Weak transcription	Colonic Mucosa	Colon
17	chr6:107192600-107194400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:107192800-107194800	Weak transcription	Stomach Mucosa	stomach
19	chr6:107192800-107200000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr6:107193000-107198400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:107193200-107193400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:107193200-107193800	Enhancers	Liver	Liver
23	chr6:107193200-107194800	Enhancers	Fetal Lung	lung
24	chr6:107193200-107195400	Enhancers	Fetal Muscle Leg	muscle

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