Variant report

Variant	rs56688330
Chromosome Location	chr6:107187381-107187382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:107187331-107187692	MCF10A-Er-Src	breast:	n/a	n/a
2	GATA3	chr6:107187345-107187661	T-47D	breast:	n/a	n/a
3	FOS	chr6:107187217-107187734	MCF10A-Er-Src	breast:	n/a	n/a
4	EP300	chr6:107187311-107187747	T-47D	breast:	n/a	n/a
5	NR3C1	chr6:107187330-107187636	A549	lung:	n/a	n/a
6	MYC	chr6:107187327-107187692	MCF10A-Er-Src	breast:	n/a	n/a
7	NR3C1	chr6:107187218-107187652	A549	lung:	n/a	n/a
8	SMC3	chr6:107187371-107187672	Hela-S3	cervix:	n/a	n/a
9	ZKSCAN1	chr6:107187353-107187633	Hela-S3	cervix:	n/a	n/a
10	NFIC	chr6:107187167-107187759	ECC-1	luminal epithelium:	n/a	n/a
11	STAT3	chr6:107187266-107187676	MCF10A-Er-Src	breast:	n/a	n/a
12	NFIC	chr6:107187292-107187807	SK-N-SH	brain:	n/a	n/a
13	USF1	chr6:107187344-107187699	A549	lung:	n/a	n/a
14	CREB1	chr6:107187222-107187646	A549	lung:	n/a	n/a
15	FOS	chr6:107187288-107187685	MCF10A-Er-Src	breast:	n/a	n/a
16	EP300	chr6:107187310-107187613	T-47D	breast:	n/a	n/a
17	MYC	chr6:107187301-107187787	MCF10A-Er-Src	breast:	n/a	n/a
18	STAT3	chr6:107187332-107187692	MCF10A-Er-Src	breast:	n/a	n/a
19	MAX	chr6:107187264-107187803	A549	lung:	n/a	n/a
20	FOSL2	chr6:107187376-107187615	A549	lung:	n/a	n/a
21	POLR2A	chr6:107187247-107187683	U87	brain:	n/a	n/a
22	FOS	chr6:107187301-107187704	MCF10A-Er-Src	breast:	n/a	n/a
23	FOS	chr6:107187311-107187734	MCF10A-Er-Src	breast:	n/a	n/a
24	NR3C1	chr6:107187312-107187592	ECC-1	luminal epithelium:	n/a	n/a
25	NR3C1	chr6:107187205-107187824	A549	lung:	n/a	n/a
26	POLR2A	chr6:107187293-107187683	U87	brain:	n/a	n/a
27	RAD21	chr6:107187365-107187775	A549	lung:	n/a	n/a
28	PAX5	chr6:107187275-107187439	GM12878	blood:	n/a	chr6:107187369-107187388 chr6:107187368-107187386 chr6:107187370-107187387
29	FOSL2	chr6:107187269-107187778	A549	lung:	n/a	n/a
30	MAZ	chr6:107187372-107187548	Hela-S3	cervix:	n/a	n/a
31	NR3C1	chr6:107187309-107187676	A549	lung:	n/a	n/a
32	POLR2A	chr6:107187239-107187747	U87	brain:	n/a	n/a
33	GATA3	chr6:107187085-107187794	A549	lung:	n/a	n/a
34	NR3C1	chr6:107187287-107187701	A549	lung:	n/a	n/a
35	NR3C1	chr6:107187281-107187673	A549	lung:	n/a	n/a
36	POLR2A	chr6:107187378-107187806	MCF10A-Er-Src	breast:	n/a	n/a
37	POLR2A	chr6:107186746-107188685	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107184501..107187121-chr6:107187172..107190930,4	MCF-7	breast:

No data

Variant related genes	Relation type
RNU6-117P	TF binding region
ENSG00000202285	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10485220	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12525578	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2236020	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945761	0.84[EUR][1000 genomes]
rs4946787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427566	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62427568	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9480704	0.88[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107179800-107197600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:107184000-107188400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:107184200-107188400	Enhancers	HMEC	breast
4	chr6:107185000-107188200	Weak transcription	Pancreas	Pancrea
5	chr6:107186800-107188600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:107186800-107189200	Enhancers	Primary B cells from cord blood	blood
7	chr6:107187000-107187400	Enhancers	Esophagus	oesophagus
8	chr6:107187000-107187600	Enhancers	Brain Hippocampus Middle	brain
9	chr6:107187000-107187600	Enhancers	Fetal Brain Male	brain
10	chr6:107187000-107187600	Enhancers	HSMM	muscle
11	chr6:107187000-107188000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:107187000-107188000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:107187000-107188400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:107187000-107188400	Enhancers	Stomach Mucosa	stomach
15	chr6:107187000-107188400	Enhancers	NHEK	skin
16	chr6:107187000-107188600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:107187000-107188600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:107187000-107189200	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:107187000-107189400	Enhancers	Liver	Liver
20	chr6:107187200-107187400	Enhancers	Colonic Mucosa	Colon
21	chr6:107187200-107187400	Enhancers	Psoas Muscle	Psoas
22	chr6:107187200-107187600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:107187200-107187600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:107187200-107187600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:107187200-107187600	Enhancers	Fetal Muscle Trunk	muscle
26	chr6:107187200-107187600	Enhancers	Spleen	Spleen
27	chr6:107187200-107187800	Enhancers	Brain Substantia Nigra	brain
28	chr6:107187200-107187800	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:107187200-107187800	Enhancers	A549	lung
30	chr6:107187200-107188600	Enhancers	Fetal Muscle Leg	muscle
31	chr6:107187200-107188600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:107187200-107189800	Enhancers	Rectal Mucosa Donor 31	rectum

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