Variant report

Variant	rs62427566
Chromosome Location	chr6:107185544-107185545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10485220	0.80[AMR][1000 genomes]
rs12525578	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2236020	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4946787	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56688330	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56838214	0.90[AFR][1000 genomes]
rs62427568	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs732290	0.89[AFR][1000 genomes]
rs9480704	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107179800-107197600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:107180600-107187000	Weak transcription	Stomach Mucosa	stomach
3	chr6:107184000-107188400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:107184200-107185600	Enhancers	NHEK	skin
5	chr6:107184200-107185800	Enhancers	Placenta	Placenta
6	chr6:107184200-107186400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:107184200-107186800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:107184200-107187200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:107184200-107188400	Enhancers	HMEC	breast
10	chr6:107184800-107187000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:107184800-107187000	Weak transcription	Liver	Liver
12	chr6:107185000-107188200	Weak transcription	Pancreas	Pancrea
13	chr6:107185200-107185600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:107185200-107187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:107185400-107185600	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links