Variant report

Variant	rs12525578
Chromosome Location	chr6:107181296-107181297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10485220	1.00[CEU][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2236020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945761	0.83[EUR][1000 genomes]
rs4946787	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56688330	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62427566	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62427568	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9480704	0.89[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.80[MEX][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107175800-107181800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:107176200-107181600	Enhancers	Pancreas	Pancrea
3	chr6:107176400-107183000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:107176800-107183000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:107177600-107181600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:107179800-107181600	Enhancers	HepG2	liver
7	chr6:107179800-107197600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:107180200-107183600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:107180400-107181400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:107180400-107181600	Enhancers	NHEK	skin
11	chr6:107180400-107182600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:107180400-107183800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:107180600-107187000	Weak transcription	Stomach Mucosa	stomach
14	chr6:107181000-107181400	Enhancers	Colonic Mucosa	Colon
15	chr6:107181000-107181600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:107181000-107181600	Enhancers	Esophagus	oesophagus
17	chr6:107181200-107183600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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