Variant report

Variant	rs4946787
Chromosome Location	chr6:107181961-107181962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10485220	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12525578	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2236020	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945761	0.88[EUR][1000 genomes]
rs56688330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427566	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62427568	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9480704	0.88[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107176400-107183000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:107176800-107183000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:107179800-107197600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:107180200-107183600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:107180400-107182600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:107180400-107183800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:107180600-107187000	Weak transcription	Stomach Mucosa	stomach
8	chr6:107181200-107183600	Weak transcription	Liver	Liver
9	chr6:107181600-107183000	Weak transcription	HepG2	liver
10	chr6:107181600-107184200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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