Variant report

Variant	rs5024557
Chromosome Location	chr2:11034629-11034630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1453083	1.00[CEU][hapmap]
rs16856827	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16856834	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55833058	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55973139	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56132627	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56217031	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56371443	0.93[EUR][1000 genomes]
rs57342819	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57661162	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60910073	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66646564	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6725242	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72643459	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72781439	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72781440	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72781442	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7562138	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7562351	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7572213	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7575138	0.82[ASN][1000 genomes]
rs7576044	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7576288	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7587715	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7587949	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7603455	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11031200-11044800	Weak transcription	Right Ventricle	heart
2	chr2:11031600-11034800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:11034400-11034800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:11034400-11035000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:11034400-11035200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:11034400-11035200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:11034600-11034800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:11034600-11035000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:11034600-11035200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:11034600-11035200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:11034600-11035200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:11034600-11035400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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