Variant report

Variant	rs55973139
Chromosome Location	chr2:11029669-11029670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11028712..11031269-chr2:11031852..11034428,2	K562	blood:
2	chr2:11029425..11031490-chr2:11033562..11035622,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13022515	0.84[ASN][1000 genomes]
rs16856827	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16856834	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34847637	0.84[ASN][1000 genomes]
rs35893784	0.84[ASN][1000 genomes]
rs4669639	0.84[ASN][1000 genomes]
rs5024557	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55833058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217031	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56371443	0.85[EUR][1000 genomes]
rs57342819	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57661162	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60910073	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66646564	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718715	0.84[ASN][1000 genomes]
rs6725242	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72643459	0.87[ASN][1000 genomes]
rs72781439	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781442	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7562138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562351	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572213	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575138	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7576044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576288	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7587715	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587949	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603455	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7604967	0.83[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11018400-11034600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11025200-11029800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:11025200-11030000	Weak transcription	Left Ventricle	heart
4	chr2:11025200-11031000	Weak transcription	Right Atrium	heart
5	chr2:11025600-11029800	Weak transcription	Brain Germinal Matrix	brain
6	chr2:11025800-11030000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:11025800-11031400	Weak transcription	Fetal Brain Female	brain
8	chr2:11026200-11031200	Weak transcription	Fetal Brain Male	brain
9	chr2:11026200-11034400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:11028000-11033200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:11029000-11031800	Enhancers	Fetal Muscle Leg	muscle
12	chr2:11029400-11030200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:11029400-11030400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:11029400-11030400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr2:11029400-11030400	Enhancers	HMEC	breast
16	chr2:11029400-11031600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:11029600-11030000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:11029600-11030200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:11029600-11030200	Enhancers	Brain Anterior Caudate	brain
20	chr2:11029600-11030200	Bivalent Enhancer	HSMMtube	muscle
21	chr2:11029600-11030400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:11029600-11030400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
23	chr2:11029600-11030400	Bivalent Enhancer	NHEK	skin
24	chr2:11029600-11030600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr2:11029600-11030800	Enhancers	Fetal Muscle Trunk	muscle
26	chr2:11029600-11031200	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links