Variant report

Variant	rs57661162
Chromosome Location	chr2:11026215-11026216
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13022515	0.84[ASN][1000 genomes]
rs16856827	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16856834	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34847637	0.84[ASN][1000 genomes]
rs35893784	0.84[ASN][1000 genomes]
rs4669639	0.84[ASN][1000 genomes]
rs5024557	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55833058	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55973139	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132627	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217031	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56371443	0.82[EUR][1000 genomes]
rs57342819	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60910073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66646564	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718715	0.84[ASN][1000 genomes]
rs6725242	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72643459	0.87[ASN][1000 genomes]
rs72781439	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781440	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781442	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7562138	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562351	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572213	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575138	0.88[ASN][1000 genomes]
rs7576044	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576288	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7587715	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587949	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603455	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7604967	0.83[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11018400-11034600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11022600-11026800	Enhancers	Fetal Intestine Large	intestine
3	chr2:11023000-11026800	Enhancers	Fetal Intestine Small	intestine
4	chr2:11023200-11028000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:11023600-11026400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:11024200-11027400	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:11024200-11029600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:11024600-11029600	Weak transcription	Right Ventricle	heart
9	chr2:11025000-11026400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:11025200-11029600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:11025200-11029800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:11025200-11030000	Weak transcription	Left Ventricle	heart
13	chr2:11025200-11031000	Weak transcription	Right Atrium	heart
14	chr2:11025400-11027800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:11025600-11029800	Weak transcription	Brain Germinal Matrix	brain
16	chr2:11025800-11026600	Weak transcription	Brain Angular Gyrus	brain
17	chr2:11025800-11029600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:11025800-11030000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:11025800-11031400	Weak transcription	Fetal Brain Female	brain
20	chr2:11026000-11029600	Weak transcription	Brain Anterior Caudate	brain
21	chr2:11026200-11026800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr2:11026200-11027200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:11026200-11031200	Weak transcription	Fetal Brain Male	brain
24	chr2:11026200-11034400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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