Variant report

Variant	rs72643459
Chromosome Location	chr2:11043887-11043888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11886386	0.86[EUR][1000 genomes]
rs11901805	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1453083	0.87[EUR][1000 genomes]
rs16856827	0.86[ASN][1000 genomes]
rs16856834	0.87[ASN][1000 genomes]
rs4669646	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5024557	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55833058	0.87[ASN][1000 genomes]
rs55973139	0.87[ASN][1000 genomes]
rs56132627	0.87[ASN][1000 genomes]
rs56217031	0.87[ASN][1000 genomes]
rs57342819	0.87[ASN][1000 genomes]
rs57661162	0.87[ASN][1000 genomes]
rs60910073	0.87[ASN][1000 genomes]
rs66646564	0.87[ASN][1000 genomes]
rs6725242	0.87[ASN][1000 genomes]
rs72781439	0.87[ASN][1000 genomes]
rs72781440	0.87[ASN][1000 genomes]
rs72781442	0.83[ASN][1000 genomes]
rs7562138	0.87[ASN][1000 genomes]
rs7562351	0.87[ASN][1000 genomes]
rs7572213	0.87[ASN][1000 genomes]
rs7576044	0.87[ASN][1000 genomes]
rs7576288	0.85[ASN][1000 genomes]
rs7578164	0.86[EUR][1000 genomes]
rs7587715	0.87[ASN][1000 genomes]
rs7587949	0.87[ASN][1000 genomes]
rs7603455	0.86[ASN][1000 genomes]
rs7603978	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv873662	chr2:11035430-11061156	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv521177	chr2:11040146-11066699	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11031200-11044800	Weak transcription	Right Ventricle	heart
2	chr2:11041000-11044600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:11041800-11044800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:11041800-11044800	Weak transcription	HMEC	breast
5	chr2:11041800-11048000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:11042000-11044000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:11042000-11044200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:11042000-11044800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:11042000-11045200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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