Variant report

Variant	rs7603455
Chromosome Location	chr2:11025644-11025645
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11021400..11025709-chr2:11030144..11033378,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13022515	0.86[ASN][1000 genomes]
rs1453083	1.00[CEU][hapmap]
rs16856827	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16856834	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34847637	0.87[ASN][1000 genomes]
rs35893784	0.87[ASN][1000 genomes]
rs4669639	0.87[ASN][1000 genomes]
rs5024557	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55833058	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55973139	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56132627	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56217031	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56371443	0.82[EUR][1000 genomes]
rs57342819	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57661162	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60910073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66646564	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6718715	0.87[ASN][1000 genomes]
rs6725242	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72643459	0.86[ASN][1000 genomes]
rs72781439	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72781440	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72781442	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7562138	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7562351	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7572213	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7575138	0.87[ASN][1000 genomes]
rs7576044	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7576288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7587715	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7587949	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7604967	0.85[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11018400-11034600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11022600-11026800	Enhancers	Fetal Intestine Large	intestine
3	chr2:11022800-11026000	Enhancers	Brain Anterior Caudate	brain
4	chr2:11023000-11025800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:11023000-11025800	Enhancers	Fetal Lung	lung
6	chr2:11023000-11025800	Enhancers	Ovary	ovary
7	chr2:11023000-11026200	Enhancers	Duodenum Mucosa	Duodenum
8	chr2:11023000-11026800	Enhancers	Fetal Intestine Small	intestine
9	chr2:11023200-11025800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:11023200-11025800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:11023200-11025800	Enhancers	Brain Angular Gyrus	brain
12	chr2:11023200-11025800	Enhancers	Brain Substantia Nigra	brain
13	chr2:11023200-11025800	Enhancers	Fetal Brain Female	brain
14	chr2:11023200-11026200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr2:11023200-11028000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:11023400-11025800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr2:11023400-11026000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:11023600-11025800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr2:11023600-11026200	Enhancers	Fetal Thymus	thymus
20	chr2:11023600-11026400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:11023800-11025800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr2:11023800-11026200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:11024200-11025800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:11024200-11027400	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:11024200-11029600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr2:11024600-11026000	Weak transcription	Small Intestine	intestine
27	chr2:11024600-11029600	Weak transcription	Right Ventricle	heart
28	chr2:11024800-11025800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr2:11025000-11026200	Enhancers	Fetal Kidney	kidney
30	chr2:11025000-11026200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr2:11025000-11026400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr2:11025200-11025800	Enhancers	Primary T cells from cord blood	blood
33	chr2:11025200-11026000	Weak transcription	Spleen	Spleen
34	chr2:11025200-11026200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:11025200-11026200	Enhancers	Fetal Brain Male	brain
36	chr2:11025200-11026200	Enhancers	HepG2	liver
37	chr2:11025200-11029600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:11025200-11029800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr2:11025200-11030000	Weak transcription	Left Ventricle	heart
40	chr2:11025200-11031000	Weak transcription	Right Atrium	heart
41	chr2:11025400-11026200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr2:11025400-11027800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr2:11025600-11026000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:11025600-11026000	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr2:11025600-11029800	Weak transcription	Brain Germinal Matrix	brain

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