Variant report

Variant	rs57342819
Chromosome Location	chr2:11030480-11030481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11028712..11031269-chr2:11031852..11034428,2	K562	blood:
2	chr2:11021272..11023587-chr2:11030045..11031855,2	K562	blood:
3	chr2:11029760..11031704-chr2:11031926..11033974,2	MCF-7	breast:
4	chr2:11021400..11025709-chr2:11030144..11033378,3	MCF-7	breast:
5	chr2:11029425..11031490-chr2:11033562..11035622,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13022515	0.84[ASN][1000 genomes]
rs16856827	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16856834	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34847637	0.84[ASN][1000 genomes]
rs35893784	0.84[ASN][1000 genomes]
rs4669639	0.84[ASN][1000 genomes]
rs5024557	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55833058	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55973139	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132627	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217031	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56371443	0.93[EUR][1000 genomes]
rs57661162	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60910073	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66646564	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718715	0.84[ASN][1000 genomes]
rs6725242	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72643459	0.87[ASN][1000 genomes]
rs72781439	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781440	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781442	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7562138	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562351	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572213	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575138	0.88[ASN][1000 genomes]
rs7576044	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576288	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7587715	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587949	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603455	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7604967	0.83[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11018400-11034600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11025200-11031000	Weak transcription	Right Atrium	heart
3	chr2:11025800-11031400	Weak transcription	Fetal Brain Female	brain
4	chr2:11026200-11031200	Weak transcription	Fetal Brain Male	brain
5	chr2:11026200-11034400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:11028000-11033200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:11029000-11031800	Enhancers	Fetal Muscle Leg	muscle
8	chr2:11029400-11031600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:11029600-11030600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:11029600-11030800	Enhancers	Fetal Muscle Trunk	muscle
11	chr2:11029600-11031200	Enhancers	Right Ventricle	heart
12	chr2:11030000-11031000	Enhancers	Left Ventricle	heart
13	chr2:11030000-11031800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr2:11030200-11031800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:11030400-11030800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:11030400-11031200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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