Variant report

Variant	rs55634648
Chromosome Location	chr5:68246330-68246331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55657218	1.00[AMR][1000 genomes]
rs56079800	1.00[AMR][1000 genomes]
rs58052452	1.00[AMR][1000 genomes]
rs59802548	1.00[AMR][1000 genomes]
rs73771636	1.00[AMR][1000 genomes]
rs73771637	1.00[AMR][1000 genomes]
rs73771638	1.00[AMR][1000 genomes]
rs73771640	1.00[AMR][1000 genomes]
rs73771642	1.00[AMR][1000 genomes]
rs73771643	1.00[AMR][1000 genomes]
rs73771646	1.00[AMR][1000 genomes]
rs73772083	1.00[AMR][1000 genomes]
rs73772084	1.00[AMR][1000 genomes]
rs73772087	1.00[AMR][1000 genomes]
rs73772098	1.00[AMR][1000 genomes]
rs73772444	1.00[AMR][1000 genomes]
rs73772450	1.00[AMR][1000 genomes]
rs73772456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772457	1.00[AMR][1000 genomes]
rs73772458	1.00[AMR][1000 genomes]
rs73772461	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68242200-68250800	Enhancers	Fetal Lung	lung
2	chr5:68244400-68246400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:68245000-68246400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:68245000-68247000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:68245000-68247000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:68245000-68247000	Enhancers	Left Ventricle	heart
7	chr5:68245000-68247000	Enhancers	Ovary	ovary
8	chr5:68245000-68247000	Enhancers	Right Atrium	heart
9	chr5:68245200-68247200	Enhancers	Adipose Nuclei	Adipose
10	chr5:68245400-68246400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:68245400-68246400	Enhancers	Fetal Muscle Trunk	muscle
12	chr5:68245400-68246800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:68245400-68246800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:68245400-68246800	Enhancers	Right Ventricle	heart
15	chr5:68245400-68247200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:68245400-68247200	Enhancers	Fetal Heart	heart
17	chr5:68245600-68246800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr5:68245600-68247000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:68245600-68247400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr5:68245800-68246400	Flanking Active TSS	HMEC	breast
21	chr5:68245800-68246600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr5:68245800-68247000	Enhancers	Brain Hippocampus Middle	brain
23	chr5:68246000-68246400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:68246000-68246400	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr5:68246000-68246400	Flanking Active TSS	NHEK	skin
26	chr5:68246000-68246600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr5:68246000-68246800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr5:68246000-68248200	Enhancers	Fetal Muscle Leg	muscle
29	chr5:68246200-68247200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:68246200-68247400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:68246200-68262200	Weak transcription	Esophagus	oesophagus

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