Variant report

Variant	rs59802548
Chromosome Location	chr5:68254552-68254553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55634648	1.00[AMR][1000 genomes]
rs55657218	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56079800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56677912	0.90[AFR][1000 genomes]
rs58052452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771640	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772083	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772084	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772085	0.80[AFR][1000 genomes]
rs73772087	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772098	1.00[AMR][1000 genomes]
rs73772444	1.00[AMR][1000 genomes]
rs73772450	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772456	1.00[AMR][1000 genomes]
rs73772457	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68246200-68262200	Weak transcription	Esophagus	oesophagus
2	chr5:68249400-68258600	Weak transcription	Right Atrium	heart
3	chr5:68250200-68257800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:68250600-68258400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:68250800-68258000	Weak transcription	Fetal Heart	heart
6	chr5:68252200-68258400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:68253400-68255000	Enhancers	Liver	Liver
8	chr5:68254200-68254600	Enhancers	Fetal Lung	lung
9	chr5:68254200-68254600	Enhancers	Gastric	stomach
10	chr5:68254400-68258600	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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