Variant report

Variant	rs73772450
Chromosome Location	chr5:68244705-68244706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55634648	1.00[AMR][1000 genomes]
rs55657218	1.00[AMR][1000 genomes]
rs56079800	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58052452	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59802548	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771636	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771637	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771638	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771640	1.00[AMR][1000 genomes]
rs73771642	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771643	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771646	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772083	1.00[AMR][1000 genomes]
rs73772084	1.00[AMR][1000 genomes]
rs73772087	1.00[AMR][1000 genomes]
rs73772098	1.00[AMR][1000 genomes]
rs73772444	1.00[AMR][1000 genomes]
rs73772456	1.00[AMR][1000 genomes]
rs73772457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772461	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830332	chr5:68238288-68282681	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68242200-68250800	Enhancers	Fetal Lung	lung
2	chr5:68243000-68245200	Weak transcription	Adipose Nuclei	Adipose
3	chr5:68243400-68245400	Weak transcription	Fetal Heart	heart
4	chr5:68243800-68245000	Weak transcription	Ovary	ovary
5	chr5:68244400-68246400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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