Variant report
| Variant | rs73771640 |
|---|---|
| Chromosome Location | chr5:68262619-68262620 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:68258016..68260416-chr5:68261824..68264961,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250066 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs55634648 | 1.00[AMR][1000 genomes] |
| rs55657218 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56079800 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56677912 | 0.80[AFR][1000 genomes] |
| rs58052452 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59802548 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771636 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771637 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771638 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771642 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771643 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771646 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772083 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772084 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772085 | 0.80[AFR][1000 genomes] |
| rs73772087 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772098 | 1.00[AMR][1000 genomes] |
| rs73772444 | 1.00[AMR][1000 genomes] |
| rs73772450 | 1.00[AMR][1000 genomes] |
| rs73772456 | 1.00[AMR][1000 genomes] |
| rs73772457 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772458 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772461 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830332 | chr5:68238288-68282681 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv3421637 | chr5:68258596-68263994 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3334736 | chr5:68259096-68263094 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3345357 | chr5:68259296-68263394 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3435534 | chr5:68259296-68263394 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv3443872 | chr5:68260446-68262944 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
