Variant report
| Variant | rs73771643 |
|---|---|
| Chromosome Location | chr5:68266024-68266025 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CCDC125-4 | chr5:68265940-68266904 | XLOC_004860 |
| 2 | lnc-CCDC125-4 | chr5:68265940-68266904 | XLOC_004860 |
| 3 | lnc-CCDC125-4 | chr5:68265940-68266904 | NONHSAT101876 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs55634648 | 1.00[AMR][1000 genomes] |
| rs55657218 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56079800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56677912 | 0.90[AFR][1000 genomes] |
| rs58052452 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59802548 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771636 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771638 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771640 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771642 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73771646 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772083 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772084 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772085 | 0.80[AFR][1000 genomes] |
| rs73772087 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772098 | 1.00[AMR][1000 genomes] |
| rs73772444 | 1.00[AMR][1000 genomes] |
| rs73772450 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772456 | 1.00[AMR][1000 genomes] |
| rs73772457 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772458 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772461 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830332 | chr5:68238288-68282681 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:68263800-68271400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
