The 2.0 version of rSNPBase

Variant report

Variant rs55657626
Chromosome Location chr2:11482923-11482924
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11479800-11485400 Active TSS GM12878-XiMat blood
2 chr2:11480000-11485800 Active TSS Aorta Aorta
3 chr2:11480200-11483000 Enhancers Primary T helper cells fromperipheralblood blood
4 chr2:11480800-11483000 Enhancers Primary T regulatory cells fromperipheralblood blood
5 chr2:11481000-11483800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr2:11481000-11483800 Flanking Active TSS Adipose Nuclei Adipose
7 chr2:11481000-11483800 Flanking Active TSS Liver Liver
8 chr2:11481000-11485200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
9 chr2:11481000-11485600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
10 chr2:11481000-11485600 Active TSS NHLF lung
11 chr2:11481000-11485800 Active TSS Ovary ovary
12 chr2:11481200-11483600 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
13 chr2:11481200-11484400 Bivalent/Poised TSS HepG2 liver
14 chr2:11481200-11484600 Active TSS Right Atrium heart
15 chr2:11481200-11485600 Active TSS Brain Inferior Temporal Lobe brain
16 chr2:11481400-11483200 Active TSS Brain Angular Gyrus brain
17 chr2:11481600-11485400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr2:11481600-11485400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
19 chr2:11481600-11485600 Active TSS HUES6 Cell Line embryonic stem cell
20 chr2:11481600-11485600 Active TSS Brain Germinal Matrix brain
21 chr2:11481600-11485800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
22 chr2:11481800-11483200 Weak transcription Small Intestine intestine
23 chr2:11481800-11483800 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
24 chr2:11481800-11483800 Active TSS Fetal Brain Female brain
25 chr2:11481800-11485200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
26 chr2:11481800-11485600 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr2:11481800-11485600 Active TSS Fetal Intestine Large intestine
28 chr2:11481800-11485600 Active TSS NHDF-Ad bronchial
29 chr2:11481800-11485800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr2:11481800-11486000 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr2:11482000-11485400 Active TSS A549 lung
32 chr2:11482000-11485400 Active TSS Hela-S3 cervix
33 chr2:11482000-11485800 Active TSS ES-I3 Cell Line embryonic stem cell
34 chr2:11482000-11486000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr2:11482000-11486000 Active TSS Breast Myoepithelial Primary Cells Breast
36 chr2:11482200-11483000 Flanking Active TSS HUES48 Cell Line embryonic stem cell
37 chr2:11482200-11483000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr2:11482200-11483000 Enhancers Primary T cells fromperipheralblood blood
39 chr2:11482200-11483000 Enhancers Primary T helper 17 cells PMA-I stimulated --
40 chr2:11482200-11483000 Flanking Active TSS NHEK skin
41 chr2:11482200-11483200 Enhancers Primary B cells from peripheral blood blood
42 chr2:11482200-11483400 Flanking Active TSS Rectal Mucosa Donor 31 rectum
43 chr2:11482200-11483600 Flanking Active TSS Dnd41 blood
44 chr2:11482200-11483600 Flanking Active TSS HUVEC blood vessel
45 chr2:11482200-11483800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr2:11482200-11484200 Active TSS Fetal Brain Male brain
47 chr2:11482200-11485200 Active TSS Stomach Smooth Muscle stomach
48 chr2:11482200-11485400 Active TSS Cortex derived primary cultured neurospheres brain
49 chr2:11482200-11485400 Active TSS Colon Smooth Muscle Colon
50 chr2:11482200-11485400 Active TSS HSMMtube muscle

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Last update: Aug 31, 2015