The 2.0 version of rSNPBase

Variant report

Variant rs72789547
Chromosome Location chr2:11477703-11477704
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11467000-11480200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr2:11467400-11481200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr2:11467600-11481600 Weak transcription Primary hematopoietic stem cells blood
4 chr2:11467800-11480200 Weak transcription Primary T helper cells fromperipheralblood blood
5 chr2:11468400-11481200 Weak transcription HUVEC blood vessel
6 chr2:11470400-11479800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr2:11470400-11481400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr2:11470800-11481200 Weak transcription Right Atrium heart
9 chr2:11470800-11481800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr2:11471000-11481200 Weak transcription HSMM muscle
11 chr2:11471200-11478600 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr2:11471200-11480400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr2:11472200-11482800 Weak transcription Gastric stomach
14 chr2:11473600-11479800 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr2:11473800-11479600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr2:11474000-11479800 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr2:11474200-11480000 Weak transcription Adipose Nuclei Adipose
18 chr2:11475000-11481200 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr2:11475400-11479800 Weak transcription Aorta Aorta
20 chr2:11475400-11481000 Weak transcription Ovary ovary
21 chr2:11475600-11478800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr2:11475800-11479200 Weak transcription NHLF lung
23 chr2:11475800-11479800 Weak transcription Liver Liver
24 chr2:11475800-11479800 Weak transcription Stomach Mucosa stomach
25 chr2:11475800-11481200 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr2:11476000-11479800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr2:11476000-11479800 Weak transcription Pancreatic Islets Pancreatic Islet
28 chr2:11476000-11479800 Weak transcription Osteobl bone
29 chr2:11476000-11480000 Weak transcription NHDF-Ad bronchial
30 chr2:11476000-11480200 Weak transcription Muscle Satellite Cultured Cells --
31 chr2:11476200-11479200 Weak transcription Hela-S3 cervix
32 chr2:11476200-11482200 Weak transcription Primary B cells from peripheral blood blood
33 chr2:11476600-11478200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr2:11476600-11482200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr2:11476600-11482800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr2:11476800-11479600 Weak transcription Colon Smooth Muscle Colon
37 chr2:11476800-11481000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr2:11476800-11481000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr2:11476800-11481200 Weak transcription Psoas Muscle Psoas
40 chr2:11476800-11482200 Weak transcription Left Ventricle heart
41 chr2:11476800-11482600 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr2:11477000-11478000 Weak transcription A549 lung
43 chr2:11477000-11478200 Weak transcription HepG2 liver
44 chr2:11477000-11478600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr2:11477000-11480000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr2:11477200-11478400 ZNF genes & repeats Fetal Intestine Small intestine
47 chr2:11477200-11482200 Weak transcription Fetal Stomach stomach
48 chr2:11477400-11480200 Weak transcription Fetal Intestine Large intestine
49 chr2:11477600-11477800 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015