Variant report

Variant	rs68193683
Chromosome Location	chr2:11494202-11494203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55657626	0.98[EUR][1000 genomes]
rs55750834	0.98[EUR][1000 genomes]
rs55841255	0.98[EUR][1000 genomes]
rs66554543	0.98[EUR][1000 genomes]
rs66668184	0.96[EUR][1000 genomes]
rs66705656	0.98[EUR][1000 genomes]
rs67791660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67998492	0.98[EUR][1000 genomes]
rs68106030	0.98[EUR][1000 genomes]
rs72771303	0.96[EUR][1000 genomes]
rs72771305	0.94[EUR][1000 genomes]
rs72774840	0.98[EUR][1000 genomes]
rs72774847	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72789547	0.98[EUR][1000 genomes]
rs7422435	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11485800-11497400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:11485800-11497400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:11489000-11495600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:11489400-11494600	Weak transcription	Fetal Intestine Small	intestine
5	chr2:11489400-11496800	Weak transcription	Adipose Nuclei	Adipose
6	chr2:11492600-11500600	Enhancers	Fetal Intestine Large	intestine
7	chr2:11493000-11495200	Enhancers	Lung	lung
8	chr2:11493400-11494800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:11493600-11494800	Weak transcription	Placenta	Placenta
10	chr2:11493600-11496800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:11493600-11497400	Weak transcription	Liver	Liver
12	chr2:11493800-11495400	Enhancers	Stomach Mucosa	stomach
13	chr2:11494000-11494400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:11494000-11494400	Flanking Active TSS	HepG2	liver
15	chr2:11494000-11494800	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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