The 2.0 version of rSNPBase

Variant report

Variant rs55841255
Chromosome Location chr2:11482034-11482035
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11472200-11482800 Weak transcription Gastric stomach
2 chr2:11476200-11482200 Weak transcription Primary B cells from peripheral blood blood
3 chr2:11476600-11482200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr2:11476600-11482800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr2:11476800-11482200 Weak transcription Left Ventricle heart
6 chr2:11476800-11482600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr2:11477200-11482200 Weak transcription Fetal Stomach stomach
8 chr2:11479000-11482600 Weak transcription Right Ventricle heart
9 chr2:11479800-11482200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr2:11479800-11482200 Enhancers Fetal Lung lung
11 chr2:11479800-11485400 Active TSS GM12878-XiMat blood
12 chr2:11480000-11485800 Active TSS Aorta Aorta
13 chr2:11480200-11482200 Weak transcription Fetal Muscle Leg muscle
14 chr2:11480200-11482600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
15 chr2:11480200-11482600 Enhancers Primary T helper cells PMA-I stimulated --
16 chr2:11480200-11483000 Enhancers Primary T helper cells fromperipheralblood blood
17 chr2:11480400-11482200 Enhancers Fetal Intestine Small intestine
18 chr2:11480600-11482400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr2:11480800-11483000 Enhancers Primary T regulatory cells fromperipheralblood blood
20 chr2:11481000-11482200 Enhancers Fetal Brain Male brain
21 chr2:11481000-11482200 Enhancers NHEK skin
22 chr2:11481000-11482200 Enhancers Osteobl bone
23 chr2:11481000-11482400 Enhancers HUES64 Cell Line embryonic stem cell
24 chr2:11481000-11482400 Flanking Active TSS HMEC breast
25 chr2:11481000-11482600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr2:11481000-11482600 Enhancers Primary T cells from cord blood blood
27 chr2:11481000-11482600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr2:11481000-11482800 Flanking Active TSS Pancreatic Islets Pancreatic Islet
29 chr2:11481000-11483800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr2:11481000-11483800 Flanking Active TSS Adipose Nuclei Adipose
31 chr2:11481000-11483800 Flanking Active TSS Liver Liver
32 chr2:11481000-11485200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:11481000-11485600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
34 chr2:11481000-11485600 Active TSS NHLF lung
35 chr2:11481000-11485800 Active TSS Ovary ovary
36 chr2:11481200-11482200 Enhancers HUES48 Cell Line embryonic stem cell
37 chr2:11481200-11482200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr2:11481200-11482200 Flanking Active TSS Cortex derived primary cultured neurospheres brain
39 chr2:11481200-11482200 Enhancers HSMM muscle
40 chr2:11481200-11482200 Enhancers HUVEC blood vessel
41 chr2:11481200-11482400 Enhancers Monocytes-CD14+_RO01746 blood
42 chr2:11481200-11482600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr2:11481200-11482600 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr2:11481200-11482800 Enhancers Primary T killer memory cells from peripheral blood blood
45 chr2:11481200-11483600 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
46 chr2:11481200-11484400 Bivalent/Poised TSS HepG2 liver
47 chr2:11481200-11484600 Active TSS Right Atrium heart
48 chr2:11481200-11485600 Active TSS Brain Inferior Temporal Lobe brain
49 chr2:11481400-11482200 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr2:11481400-11482200 Enhancers Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015