The 2.0 version of rSNPBase

Variant report

Variant rs55750834
Chromosome Location chr2:11488044-11488045
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11485600-11488400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr2:11485800-11488400 Weak transcription Pancreas Pancrea
3 chr2:11485800-11488400 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr2:11485800-11488600 Weak transcription Brain Cingulate Gyrus brain
5 chr2:11485800-11488800 Weak transcription Gastric stomach
6 chr2:11485800-11497400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr2:11485800-11497400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr2:11486000-11488400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr2:11486000-11488400 Weak transcription Brain Hippocampus Middle brain
10 chr2:11486000-11488600 Weak transcription Brain Inferior Temporal Lobe brain
11 chr2:11486000-11489400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr2:11486200-11488400 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr2:11486200-11488400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr2:11486200-11489400 Enhancers Adipose Nuclei Adipose
15 chr2:11486200-11493800 Weak transcription Stomach Mucosa stomach
16 chr2:11486400-11488200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr2:11486400-11488200 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr2:11486400-11488400 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr2:11486400-11488400 Weak transcription Liver Liver
20 chr2:11486400-11488400 Weak transcription Brain Substantia Nigra brain
21 chr2:11486400-11488400 Weak transcription Duodenum Mucosa Duodenum
22 chr2:11486400-11488400 Weak transcription Skeletal Muscle Male skeletal muscle
23 chr2:11486400-11488600 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr2:11486400-11488600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr2:11486400-11488800 Enhancers ES-I3 Cell Line embryonic stem cell
26 chr2:11486400-11489800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr2:11486400-11490400 Enhancers HepG2 liver
28 chr2:11486600-11488400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr2:11486600-11488400 Weak transcription Fetal Intestine Large intestine
30 chr2:11486600-11488400 Weak transcription Placenta Placenta
31 chr2:11486600-11488400 Weak transcription Small Intestine intestine
32 chr2:11486600-11489600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:11486600-11493000 Weak transcription Lung lung
34 chr2:11486800-11488400 Weak transcription Fetal Intestine Small intestine
35 chr2:11487000-11488600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr2:11487000-11489000 Enhancers Rectal Mucosa Donor 31 rectum
37 chr2:11487400-11488600 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr2:11487600-11488800 Enhancers Sigmoid Colon Sigmoid Colon
39 chr2:11487800-11488400 Weak transcription A549 lung

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Last update: Aug 31, 2015