The 2.0 version of rSNPBase

Variant report

Variant rs55739626
Chromosome Location chr3:53364980-53364981
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53338000-53374000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr3:53338200-53380200 Weak transcription Fetal Brain Male brain
3 chr3:53338400-53367400 Weak transcription Small Intestine intestine
4 chr3:53346000-53373600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr3:53346200-53365200 Weak transcription Fetal Kidney kidney
6 chr3:53346200-53378600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr3:53346400-53365400 Weak transcription Brain Angular Gyrus brain
8 chr3:53346400-53367600 Weak transcription Placenta Amnion Placenta Amnion
9 chr3:53346400-53370000 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr3:53346600-53380600 Weak transcription Spleen Spleen
11 chr3:53347200-53371400 Weak transcription HMEC breast
12 chr3:53352200-53365400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr3:53352800-53380600 Weak transcription Esophagus oesophagus
14 chr3:53353000-53374600 Weak transcription Fetal Brain Female brain
15 chr3:53353000-53380600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr3:53353200-53365200 Weak transcription HSMM muscle
17 chr3:53353200-53365400 Weak transcription NH-A brain
18 chr3:53353400-53377000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr3:53353600-53365400 Weak transcription NHDF-Ad bronchial
20 chr3:53354000-53371400 Weak transcription NHEK skin
21 chr3:53354200-53365400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr3:53354200-53367200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr3:53354400-53365400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr3:53355200-53365200 Weak transcription Primary B cells from peripheral blood blood
25 chr3:53355400-53368000 Weak transcription Hela-S3 cervix
26 chr3:53355400-53371600 Weak transcription HSMMtube muscle
27 chr3:53358200-53378800 Strong transcription Monocytes-CD14+_RO01746 blood
28 chr3:53358400-53365400 Weak transcription Brain Substantia Nigra brain
29 chr3:53358400-53380600 Weak transcription Lung lung
30 chr3:53358600-53370200 Weak transcription Brain Inferior Temporal Lobe brain
31 chr3:53358600-53371600 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr3:53358600-53372200 Weak transcription Pancreas Pancrea
33 chr3:53358800-53365400 Weak transcription Fetal Lung lung
34 chr3:53358800-53376200 Weak transcription K562 blood
35 chr3:53360000-53372800 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr3:53360000-53374000 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr3:53360200-53366600 Strong transcription Liver Liver
38 chr3:53360400-53376400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr3:53360600-53365400 Weak transcription Osteobl bone
40 chr3:53360600-53366000 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr3:53360600-53380400 Weak transcription H9 Cell Line embryonic stem cell
42 chr3:53360800-53365200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr3:53360800-53365400 Weak transcription Stomach Smooth Muscle stomach
44 chr3:53360800-53367600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr3:53360800-53375800 Weak transcription Aorta Aorta
46 chr3:53360800-53380600 Weak transcription Gastric stomach
47 chr3:53361000-53365400 Weak transcription Brain Hippocampus Middle brain
48 chr3:53361000-53367400 Weak transcription Muscle Satellite Cultured Cells --
49 chr3:53361200-53365000 Weak transcription Primary T helper cells fromperipheralblood blood
50 chr3:53361200-53365400 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015