Variant report

Variant	rs73843129
Chromosome Location	chr3:53392730-53392731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53379042..53384890-chr3:53390309..53393791,5	K562	blood:
2	chr3:53391351..53392956-chr3:53396369..53398463,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162290	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs55739626	1.00[AMR][1000 genomes]
rs55797425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56138740	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56403138	1.00[AMR][1000 genomes]
rs57085673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57188310	1.00[AMR][1000 genomes]
rs57320366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57530569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58006923	1.00[AMR][1000 genomes]
rs58191586	1.00[AMR][1000 genomes]
rs58563464	1.00[AMR][1000 genomes]
rs58651265	1.00[AMR][1000 genomes]
rs60407612	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60891705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957562	1.00[AMR][1000 genomes]
rs73840109	1.00[AMR][1000 genomes]
rs73840110	1.00[AMR][1000 genomes]
rs73840113	1.00[AMR][1000 genomes]
rs73840218	1.00[AMR][1000 genomes]
rs73840219	1.00[AMR][1000 genomes]
rs73840220	1.00[AMR][1000 genomes]
rs73840224	1.00[AMR][1000 genomes]
rs73840228	1.00[AMR][1000 genomes]
rs73840236	1.00[AMR][1000 genomes]
rs73840239	1.00[AMR][1000 genomes]
rs73840247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840298	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843111	1.00[AMR][1000 genomes]
rs73843112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843113	1.00[AMR][1000 genomes]
rs73843115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843118	1.00[AFR][1000 genomes]
rs73843120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843124	1.00[AMR][1000 genomes]
rs73843127	1.00[AMR][1000 genomes]
rs73843130	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843148	1.00[AMR][1000 genomes]
rs874586	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876801	chr3:53325905-53467506	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv876802	chr3:53325905-53470863	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53387200-53392800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:53390400-53392800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:53390400-53393200	Weak transcription	HUVEC	blood vessel
4	chr3:53391800-53393000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:53392000-53393400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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