Variant report

Variant	rs73843110
Chromosome Location	chr3:53319813-53319814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:53289083..53290677-chr3:53319706..53322306,2	MCF-7	breast:
2	chr3:53288401..53290703-chr3:53318861..53320901,2	K562	blood:
3	chr3:53319703..53321430-chr3:53323136..53326005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206902	Chromatin interaction
ENSG00000163931	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs55739626	1.00[AMR][1000 genomes]
rs55797425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56138740	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57085673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57188310	1.00[AMR][1000 genomes]
rs57320366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57530569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58006923	1.00[AMR][1000 genomes]
rs58191586	1.00[AMR][1000 genomes]
rs58563464	1.00[AMR][1000 genomes]
rs60407612	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60891705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957562	1.00[AMR][1000 genomes]
rs73840109	1.00[AMR][1000 genomes]
rs73840110	1.00[AMR][1000 genomes]
rs73840218	1.00[AMR][1000 genomes]
rs73840219	1.00[AMR][1000 genomes]
rs73840220	1.00[AMR][1000 genomes]
rs73840224	1.00[AMR][1000 genomes]
rs73840228	1.00[AMR][1000 genomes]
rs73840236	1.00[AMR][1000 genomes]
rs73840239	1.00[AMR][1000 genomes]
rs73840247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840298	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843111	1.00[AMR][1000 genomes]
rs73843112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843113	1.00[AMR][1000 genomes]
rs73843115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843118	1.00[AFR][1000 genomes]
rs73843120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843124	1.00[AMR][1000 genomes]
rs73843127	1.00[AMR][1000 genomes]
rs73843129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843130	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843148	1.00[AMR][1000 genomes]
rs874586	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834699	chr3:53151876-53325808	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv517233	chr3:53175557-53321002	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53304600-53320600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:53304600-53325600	Weak transcription	Fetal Heart	heart
3	chr3:53304600-53326200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:53305000-53320200	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:53305000-53324400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:53305600-53320200	Weak transcription	Brain Substantia Nigra	brain
7	chr3:53309400-53320200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:53309400-53351200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:53309600-53320400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:53309800-53325600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:53309800-53326200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:53312200-53337400	Weak transcription	Psoas Muscle	Psoas
13	chr3:53312400-53328000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:53313200-53320600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:53313200-53321400	Weak transcription	Fetal Kidney	kidney
16	chr3:53314200-53325600	Weak transcription	Colonic Mucosa	Colon
17	chr3:53314200-53326400	Weak transcription	K562	blood
18	chr3:53314800-53320600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:53315000-53320200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:53315200-53320800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:53315200-53326800	Strong transcription	Primary B cells from cord blood	blood
22	chr3:53315200-53333800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr3:53315200-53338400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr3:53315400-53320400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:53315400-53320800	Strong transcription	Fetal Thymus	thymus
26	chr3:53315600-53322800	Strong transcription	Thymus	Thymus
27	chr3:53316400-53322600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:53316400-53322600	Strong transcription	Adipose Nuclei	Adipose
29	chr3:53316400-53323000	Strong transcription	Primary T cells from cord blood	blood
30	chr3:53316400-53333600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr3:53316400-53337600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:53316600-53320000	Strong transcription	Right Ventricle	heart
33	chr3:53316600-53320800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:53316600-53320800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:53316600-53321000	Strong transcription	Primary hematopoietic stem cells	blood
36	chr3:53316600-53321000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:53316600-53321400	Strong transcription	HUVEC	blood vessel
38	chr3:53316600-53322200	Strong transcription	Lung	lung
39	chr3:53316600-53322400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr3:53316600-53322600	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:53316600-53322600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:53316600-53322800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr3:53316600-53322800	Strong transcription	Dnd41	blood
44	chr3:53316600-53324400	Strong transcription	Left Ventricle	heart
45	chr3:53316600-53327200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:53316600-53327200	Strong transcription	Liver	Liver
47	chr3:53316600-53329200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:53316600-53333600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr3:53316600-53333800	Strong transcription	Placenta	Placenta
50	chr3:53316600-53338600	Strong transcription	Fetal Muscle Leg	muscle

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