Variant report
| Variant | rs56138740 |
|---|---|
| Chromosome Location | chr3:53486144-53486145 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:53483998..53487895-chr3:53489521..53492468,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs55739626 | 1.00[AMR][1000 genomes] |
| rs55797425 | 1.00[AMR][1000 genomes] |
| rs56403138 | 1.00[AMR][1000 genomes] |
| rs57085673 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57320366 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57530569 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58651265 | 1.00[AMR][1000 genomes] |
| rs60407612 | 1.00[AMR][1000 genomes] |
| rs60891705 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72957562 | 1.00[AMR][1000 genomes] |
| rs73840109 | 1.00[AMR][1000 genomes] |
| rs73840110 | 1.00[AMR][1000 genomes] |
| rs73840113 | 1.00[AMR][1000 genomes] |
| rs73840155 | 1.00[AMR][1000 genomes] |
| rs73840260 | 1.00[AMR][1000 genomes] |
| rs73840281 | 1.00[AMR][1000 genomes] |
| rs73840298 | 1.00[AMR][1000 genomes] |
| rs73843106 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843108 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843110 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843111 | 1.00[AMR][1000 genomes] |
| rs73843112 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843113 | 1.00[AMR][1000 genomes] |
| rs73843115 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843117 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843118 | 0.86[AFR][1000 genomes] |
| rs73843120 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843121 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843124 | 1.00[AMR][1000 genomes] |
| rs73843127 | 1.00[AMR][1000 genomes] |
| rs73843129 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73843130 | 1.00[AMR][1000 genomes] |
| rs73843148 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs740758 | 0.82[AFR][1000 genomes] |
| rs874586 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003621 | chr3:53448934-54425322 | Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:53486000-53486800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
