Variant report

Variant	rs55786426
Chromosome Location	chr13:98194449-98194450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56265337	1.00[AMR][1000 genomes]
rs56330757	1.00[AMR][1000 genomes]
rs56396307	1.00[AMR][1000 genomes]
rs57122527	1.00[AMR][1000 genomes]
rs58319854	1.00[AMR][1000 genomes]
rs59441671	1.00[AMR][1000 genomes]
rs60276769	1.00[AMR][1000 genomes]
rs60791550	1.00[AMR][1000 genomes]
rs60954566	1.00[AMR][1000 genomes]
rs61086335	1.00[AMR][1000 genomes]
rs61649100	1.00[AMR][1000 genomes]
rs7335097	1.00[AMR][1000 genomes]
rs74105068	1.00[AMR][1000 genomes]
rs74105069	1.00[AMR][1000 genomes]
rs74105076	1.00[AMR][1000 genomes]
rs74105168	1.00[AMR][1000 genomes]
rs74105466	1.00[AMR][1000 genomes]
rs74105468	1.00[AMR][1000 genomes]
rs74105475	1.00[AMR][1000 genomes]
rs74105476	1.00[AMR][1000 genomes]
rs74105499	1.00[AMR][1000 genomes]
rs74105501	1.00[AMR][1000 genomes]
rs74106253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74106255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74106912	1.00[AMR][1000 genomes]
rs74106938	1.00[AMR][1000 genomes]
rs74106939	1.00[AMR][1000 genomes]
rs74106943	1.00[AMR][1000 genomes]
rs74106946	1.00[AMR][1000 genomes]
rs74108410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98191800-98195200	Enhancers	Fetal Lung	lung
2	chr13:98192400-98194600	Weak transcription	Fetal Heart	heart
3	chr13:98192400-98196000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:98192400-98196600	Enhancers	Fetal Stomach	stomach
5	chr13:98192800-98195400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:98193000-98195600	Enhancers	Fetal Muscle Leg	muscle
7	chr13:98193400-98194800	Enhancers	Left Ventricle	heart
8	chr13:98193400-98197600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:98194000-98194600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr13:98194000-98194600	Weak transcription	Right Ventricle	heart
11	chr13:98194200-98194800	Enhancers	Fetal Kidney	kidney
12	chr13:98194400-98194800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr13:98194400-98194800	Enhancers	NHDF-Ad	bronchial
14	chr13:98194400-98197000	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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