Variant report

Variant	rs61086335
Chromosome Location	chr13:98078469-98078470
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs55786426	1.00[AMR][1000 genomes]
rs56265337	1.00[AMR][1000 genomes]
rs56330757	1.00[AMR][1000 genomes]
rs56396307	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57122527	1.00[AMR][1000 genomes]
rs58319854	1.00[AMR][1000 genomes]
rs59441671	1.00[AMR][1000 genomes]
rs60276769	1.00[AMR][1000 genomes]
rs60791550	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60954566	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61649100	1.00[AMR][1000 genomes]
rs7335097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105168	1.00[AMR][1000 genomes]
rs74105466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105468	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105499	1.00[AMR][1000 genomes]
rs74105501	1.00[AMR][1000 genomes]
rs74106253	1.00[AMR][1000 genomes]
rs74106255	1.00[AMR][1000 genomes]
rs74106912	1.00[AMR][1000 genomes]
rs74106938	1.00[AMR][1000 genomes]
rs74106939	1.00[AMR][1000 genomes]
rs74106943	1.00[AMR][1000 genomes]
rs74106946	1.00[AMR][1000 genomes]
rs74108410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98076000-98081800	Weak transcription	HSMM	muscle
2	chr13:98076400-98081200	Weak transcription	Brain Angular Gyrus	brain
3	chr13:98076400-98081600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:98076400-98081600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:98076400-98081600	Weak transcription	Brain Substantia Nigra	brain
6	chr13:98076400-98081800	Weak transcription	Fetal Heart	heart
7	chr13:98076400-98081800	Weak transcription	Psoas Muscle	Psoas
8	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr13:98076400-98081800	Weak transcription	NHDF-Ad	bronchial
11	chr13:98076400-98081800	Weak transcription	Osteobl	bone
12	chr13:98076400-98084800	Weak transcription	Esophagus	oesophagus
13	chr13:98076600-98081000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:98076600-98081800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:98077200-98078800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr13:98077200-98081600	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:98078000-98078600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr13:98078000-98081000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr13:98078200-98081200	Weak transcription	Brain Anterior Caudate	brain
20	chr13:98078200-98081600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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