The 2.0 version of rSNPBase

Variant report

Variant rs57122527
Chromosome Location chr13:98012330-98012331
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:97982600-98020800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr13:97991600-98020800 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr13:97992800-98020800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr13:97994200-98016200 Weak transcription NHDF-Ad bronchial
5 chr13:97995400-98050200 Weak transcription Small Intestine intestine
6 chr13:97996200-98019400 Weak transcription GM12878-XiMat blood
7 chr13:97997400-98019000 Weak transcription Muscle Satellite Cultured Cells --
8 chr13:97998400-98015800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr13:97999600-98019200 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr13:98002400-98027200 Weak transcription Lung lung
11 chr13:98002400-98039600 Weak transcription Spleen Spleen
12 chr13:98002600-98013600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr13:98002600-98021600 Weak transcription Colonic Mucosa Colon
14 chr13:98003200-98021200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr13:98003800-98012800 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr13:98003800-98013000 Weak transcription Stomach Smooth Muscle stomach
17 chr13:98003800-98018000 Weak transcription Fetal Brain Male brain
18 chr13:98003800-98019000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr13:98004000-98013000 Weak transcription Ovary ovary
20 chr13:98004000-98013200 Weak transcription Fetal Kidney kidney
21 chr13:98004000-98018600 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr13:98004000-98019200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr13:98004000-98021000 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr13:98004200-98012800 Weak transcription Fetal Stomach stomach
25 chr13:98004200-98014200 Weak transcription Fetal Intestine Small intestine
26 chr13:98004400-98019400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr13:98005400-98012800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr13:98005400-98021600 Weak transcription Thymus Thymus
29 chr13:98006200-98012800 Enhancers Brain Anterior Caudate brain
30 chr13:98006600-98013000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr13:98006600-98020600 Strong transcription HUVEC blood vessel
32 chr13:98006800-98014800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr13:98006800-98018600 Weak transcription HSMMtube muscle
34 chr13:98007400-98012800 Weak transcription HSMM muscle
35 chr13:98008600-98014800 Weak transcription Fetal Heart heart
36 chr13:98008600-98015200 Strong transcription NH-A brain
37 chr13:98009000-98015200 Strong transcription Osteobl bone
38 chr13:98009200-98012800 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr13:98009200-98012800 Weak transcription NHEK skin
40 chr13:98009200-98015000 Weak transcription Psoas Muscle Psoas
41 chr13:98009200-98019200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr13:98009600-98019000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr13:98009800-98014800 Weak transcription Aorta Aorta
44 chr13:98010000-98012800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr13:98010000-98012800 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr13:98010000-98012800 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr13:98010000-98013000 Weak transcription Primary T cells from cord blood blood
48 chr13:98010000-98013200 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr13:98010000-98013400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr13:98010000-98013400 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015