Variant report

Variant	rs60954566
Chromosome Location	chr13:98144010-98144011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs55786426	1.00[AMR][1000 genomes]
rs56265337	1.00[AMR][1000 genomes]
rs56330757	1.00[AMR][1000 genomes]
rs56396307	1.00[AMR][1000 genomes]
rs57122527	1.00[AMR][1000 genomes]
rs58319854	1.00[AMR][1000 genomes]
rs59441671	1.00[AMR][1000 genomes]
rs60276769	1.00[AMR][1000 genomes]
rs60791550	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61086335	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61649100	1.00[AMR][1000 genomes]
rs7335097	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105068	1.00[AMR][1000 genomes]
rs74105069	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105076	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105168	1.00[AMR][1000 genomes]
rs74105466	1.00[AMR][1000 genomes]
rs74105468	1.00[AMR][1000 genomes]
rs74105475	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105476	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105499	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105501	1.00[AMR][1000 genomes]
rs74106253	1.00[AMR][1000 genomes]
rs74106255	1.00[AMR][1000 genomes]
rs74106912	1.00[AMR][1000 genomes]
rs74106938	1.00[AMR][1000 genomes]
rs74106939	1.00[AMR][1000 genomes]
rs74106943	1.00[AMR][1000 genomes]
rs74106946	1.00[AMR][1000 genomes]
rs74108410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98142600-98145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:98143200-98145800	Enhancers	HepG2	liver
3	chr13:98144000-98144200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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