Variant report

Variant	rs55821789
Chromosome Location	chr8:69641502-69641503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11984995	0.83[AMR][1000 genomes]
rs16934792	0.83[AMR][1000 genomes]
rs55731817	1.00[AMR][1000 genomes]
rs55820094	0.83[AMR][1000 genomes]
rs56405329	0.83[AMR][1000 genomes]
rs56706627	0.83[AMR][1000 genomes]
rs57624575	0.83[AMR][1000 genomes]
rs58619671	0.83[AMR][1000 genomes]
rs60577322	0.83[AMR][1000 genomes]
rs6986385	0.83[AMR][1000 genomes]
rs6987972	0.83[AMR][1000 genomes]
rs73683589	0.83[AMR][1000 genomes]
rs73683594	0.83[AMR][1000 genomes]
rs7818791	0.83[AMR][1000 genomes]
rs7818845	0.83[AMR][1000 genomes]
rs984415	0.83[AMR][1000 genomes]
rs984878	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv818636	chr8:69636599-69642205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69637200-69642000	Weak transcription	HUVEC	blood vessel
2	chr8:69638000-69646400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:69640200-69645200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:69640200-69676800	Weak transcription	Aorta	Aorta
5	chr8:69640600-69642000	Weak transcription	Fetal Brain Male	brain
6	chr8:69641000-69644400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:69641000-69644600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:69641200-69641800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:69641200-69643400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:69641200-69644200	Enhancers	NHLF	lung
11	chr8:69641400-69643600	Enhancers	NHDF-Ad	bronchial
12	chr8:69641400-69643800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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