Variant report

Variant	rs57624575
Chromosome Location	chr8:69562432-69562433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69553820..69556062-chr8:69561898..69564089,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11984995	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11992298	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11997399	0.92[EUR][1000 genomes]
rs16934792	0.84[EUR][1000 genomes]
rs16934878	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16934930	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55691147	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55718353	0.96[EUR][1000 genomes]
rs55731817	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55820094	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55821789	0.83[AMR][1000 genomes]
rs55851115	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56194107	0.92[EUR][1000 genomes]
rs56405329	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56706627	0.87[EUR][1000 genomes]
rs58619671	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59276657	0.87[EUR][1000 genomes]
rs60577322	0.92[EUR][1000 genomes]
rs60704896	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60946548	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6651316	0.84[EUR][1000 genomes]
rs6986385	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6987972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991955	1.00[ASN][1000 genomes]
rs6992870	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7012051	0.96[EUR][1000 genomes]
rs7013783	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73683589	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73683594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73683595	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73683703	0.96[EUR][1000 genomes]
rs7818791	0.80[EUR][1000 genomes]
rs7818845	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984415	0.96[EUR][1000 genomes]
rs984878	0.92[EUR][1000 genomes]
rs9987198	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv972529	chr8:69561897-69568157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
2	chr8:69561400-69562600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:69562000-69563000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:69562000-69563000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:69562000-69563200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:69562200-69563200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:69562200-69563600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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