Variant report

Variant	rs16934930
Chromosome Location	chr8:69616597-69616598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69609836..69613809-chr8:69614366..69618965,6	MCF-7	breast:
2	chr8:69609765..69614722-chr8:69616148..69622047,8	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11984995	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11989629	1.00[CEU][hapmap]
rs11989752	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs11992298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993217	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];0.81[YRI][hapmap]
rs11993687	1.00[CEU][hapmap]
rs11997399	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16934738	0.85[CEU][hapmap]
rs16934792	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16934878	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16934892	1.00[CEU][hapmap]
rs16934901	0.81[ASW][hapmap];0.82[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16934903	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs16934945	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16934954	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17388090	1.00[CEU][hapmap]
rs55691147	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55718353	1.00[EUR][1000 genomes]
rs55731817	1.00[EUR][1000 genomes]
rs55820094	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55851115	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56194107	0.96[EUR][1000 genomes]
rs56405329	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56706627	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57624575	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58619671	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59276657	0.91[EUR][1000 genomes]
rs60577322	0.87[EUR][1000 genomes]
rs60704896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60946548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651316	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6986385	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987972	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6992870	1.00[CEU][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012051	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7013783	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7014834	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7015275	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs73683589	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683594	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683595	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683703	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818791	1.00[CEU][hapmap]
rs7818845	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs984415	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs984878	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs9987198	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69611800-69622400	Weak transcription	Aorta	Aorta
2	chr8:69613000-69618200	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:69613000-69621000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:69614200-69622400	Weak transcription	Adipose Nuclei	Adipose
5	chr8:69614200-69622600	Weak transcription	Pancreas	Pancrea
6	chr8:69615600-69616600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:69615600-69617200	Enhancers	HSMM	muscle
8	chr8:69615800-69617400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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