Variant report

Variant	rs6651316
Chromosome Location	chr8:69620147-69620148
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69609765..69614722-chr8:69616148..69622047,8	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11984995	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11989629	1.00[CEU][hapmap]
rs11989752	1.00[CEU][hapmap]
rs11992298	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11993217	1.00[CEU][hapmap]
rs11993687	1.00[CEU][hapmap]
rs11997399	1.00[CEU][hapmap]
rs16934738	0.87[CEU][hapmap]
rs16934792	1.00[CEU][hapmap]
rs16934878	0.87[AMR][1000 genomes]
rs16934892	1.00[CEU][hapmap]
rs16934901	0.82[CEU][hapmap]
rs16934903	1.00[CEU][hapmap]
rs16934930	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16934945	1.00[CEU][hapmap];0.86[AFR][1000 genomes]
rs16934954	1.00[CEU][hapmap]
rs17388090	1.00[CEU][hapmap]
rs55691147	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55718353	0.88[EUR][1000 genomes]
rs55731817	0.88[EUR][1000 genomes]
rs55820094	0.88[EUR][1000 genomes]
rs55851115	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56194107	0.84[EUR][1000 genomes]
rs56405329	0.88[EUR][1000 genomes]
rs56706627	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs57624575	0.84[EUR][1000 genomes]
rs59276657	0.80[EUR][1000 genomes]
rs60704896	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60946548	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6986385	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6987972	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6992870	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7012051	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7013783	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7014834	1.00[CEU][hapmap]
rs7015275	1.00[CEU][hapmap]
rs73683589	0.88[EUR][1000 genomes]
rs73683594	0.88[EUR][1000 genomes]
rs73683595	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73683703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7818791	1.00[CEU][hapmap]
rs7818845	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs984415	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs984878	1.00[CEU][hapmap]
rs9987198	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69611800-69622400	Weak transcription	Aorta	Aorta
2	chr8:69613000-69621000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:69614200-69622400	Weak transcription	Adipose Nuclei	Adipose
4	chr8:69614200-69622600	Weak transcription	Pancreas	Pancrea
5	chr8:69616600-69622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:69617200-69623200	Weak transcription	HSMM	muscle
7	chr8:69619600-69623000	Weak transcription	Muscle Satellite Cultured Cells	--

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