Variant report

Variant	rs55820094
Chromosome Location	chr8:69609301-69609302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69604610..69607448-chr8:69608614..69611000,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11984995	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11992298	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997399	0.87[EUR][1000 genomes]
rs16934792	0.80[EUR][1000 genomes]
rs16934878	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16934930	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934945	0.82[EUR][1000 genomes]
rs55691147	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55718353	1.00[EUR][1000 genomes]
rs55731817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55821789	0.83[AMR][1000 genomes]
rs55851115	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56194107	0.96[EUR][1000 genomes]
rs56405329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56706627	0.91[EUR][1000 genomes]
rs57624575	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58619671	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59276657	0.91[EUR][1000 genomes]
rs60577322	0.87[EUR][1000 genomes]
rs60704896	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60946548	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651316	0.88[EUR][1000 genomes]
rs6986385	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987972	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6992870	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012051	1.00[EUR][1000 genomes]
rs7013783	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683589	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683594	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683595	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73683703	1.00[EUR][1000 genomes]
rs7818845	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs984415	0.92[EUR][1000 genomes]
rs984878	0.87[EUR][1000 genomes]
rs9987198	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3339547	chr8:69607698-69609696	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69608400-69610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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